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View Structure Prediction Details

Protein: AGT22_ARATH
Organism: Arabidopsis thaliana
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGT22_ARATH.

Description E-value Query
Range
Subject
Range
gi|15028237 - gi|15028237|gb|AAK76615.1| putative beta-alanine-pyruvate aminotransferase [Arabidopsis thaliana]
432.0 [0..1] [477..1]

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Predicted Domain #1
Region A:
Residues: [1-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRFAAKRSV QNISVSLWRR CISSTSQAAT ASVKDSDEFQ ARLPPFAYTP PPYTGPSADV  60
   61 ILSKRKEFLS PSMFCLYRKP LNIVDGKMQY LFDESGRRYL DAFAGIAVVN CGHCHPDVVE 120
  121 PVINQIKRLQ HPTVLYLNHA IADFSEALAS KLPGDLKVVF FTNSGTEANE LALMMAKLYT 180
  181 GCQDIVAVRN GYHGNAAATM GATGQSMWKF NVVQNSVHHA LNPDPYRGVF GSDGEKYAKD 240
  241 LQDLIQYGTT GHIAGFICEA IQGVGGIVEL APGYLSAAYD TVKKAGGLFI ADEVQSGFAR 300
  301 TGNFWGFEAH NVVPDIVTMA KGIGNGFPLG AVVTTPEIAG VLTRRSYFNT FGGNSVSTTA 360
  361 GLAVLNVIEK EKLQENAAMV GSYLKEKLTQ LKEKHEIIGD VRGRGLMLGV ELVSDRKLKT 420
  421 PATAETLHIM DQMKELGVLI GKGGYFGNVF RITPPLCFTK DDADFLVEAM DYSMSKM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 102.0
Match: 1sf2A
Description: Structure of E. coli gamma-aminobutyrate aminotransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
4-aminobutyrate transaminase activity 9.08769857759091 bayes_pls_golite062009
succinate-semialdehyde dehydrogenase binding 8.44659094913875 bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity 3.359406422625 bayes_pls_golite062009
transferase activity 2.59075614411581 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
5-aminolevulinate synthase activity 1.85905571238884 bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity 1.74778109525713 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.46601963907552 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.46601963907552 bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity 1.4383564662931 bayes_pls_golite062009
glutamate decarboxylase activity 1.34215658716536 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.19150094103499 bayes_pls_golite062009
transcription regulator activity 0.977210827616757 bayes_pls_golite062009
nucleic acid binding 0.892872530648552 bayes_pls_golite062009
binding 0.892049641082766 bayes_pls_golite062009
ligase activity 0.827063849687833 bayes_pls_golite062009
DNA binding 0.803965264969424 bayes_pls_golite062009
kynureninase activity 0.777830972119923 bayes_pls_golite062009
carbon-sulfur lyase activity 0.698312655247044 bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups 0.659071155545801 bayes_pls_golite062009
transcription factor activity 0.597417107954964 bayes_pls_golite062009
N-succinyltransferase activity 0.52897097514616 bayes_pls_golite062009
ornithine-oxo-acid transaminase activity 0.311107335626334 bayes_pls_golite062009
N-acyltransferase activity 0.2609065149092 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
cystathionine beta-lyase activity 0.15938456446406 bayes_pls_golite062009
hydrolase activity 0.158765164178244 bayes_pls_golite062009
amine binding 0.14702601411039 bayes_pls_golite062009
methyltransferase activity 0.103986924428507 bayes_pls_golite062009
sulfurtransferase activity 0.0450490929307473 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.0254276656964899 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle