| Protein: | Y3288_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 627 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3288_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
363.0 | [0..3] | [627..131] |
|
Region A: Residues: [1-233] |
1 11 21 31 41 51
| | | | | |
1 MKYKRKLSLS VVFLFVFYLA AVTSDLESDR RALLAVRNSV RGRPLLWNMS ASSPCNWHGV 60
61 HCDAGRVTAL RLPGSGLFGS LPIGGIGNLT QLKTLSLRFN SLSGPIPSDF SNLVLLRYLY 120
121 LQGNAFSGEI PSLLFTLPSI IRINLGENKF SGRIPDNVNS ATRLVTLYLE RNQLSGPIPE 180
181 ITLPLQQFNV SSNQLNGSIP SSLSSWPRTA FEGNTLCGKP LDTCEAESPN GGD
|
| Detection Method: |  |
| Confidence: | 16.69897 |
| Match: | 1ogqA |
| Description: | Polygalacturonase inhibiting protein PGIP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| receptor activity | 3.26307298864411 | bayes_pls_golite062009 |
| transmembrane receptor activity | 3.15814977487775 | bayes_pls_golite062009 |
| molecular transducer activity | 2.54176035045352 | bayes_pls_golite062009 |
| signal transducer activity | 2.54176035045352 | bayes_pls_golite062009 |
| G-protein coupled receptor activity | 2.38174370875276 | bayes_pls_golite062009 |
| protein kinase activity | 1.61450095469422 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 1.50579173120225 | bayes_pls_golite062009 |
| binding | 1.44369481405695 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 1.36671598599873 | bayes_pls_golite062009 |
| kinase activity | 1.28067810202729 | bayes_pls_golite062009 |
| actin binding | 1.21726363067325 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.17332908979699 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.05564877695171 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.950165801339728 | bayes_pls_golite062009 |
| protein binding | 0.646159692466759 | bayes_pls_golite062009 |
| structural molecule activity | 0.611417906910562 | bayes_pls_golite062009 |
| receptor binding | 0.596307412859703 | bayes_pls_golite062009 |
| transferase activity | 0.435331931559158 | bayes_pls_golite062009 |
| epidermal growth factor receptor binding | 0.430075899423884 | bayes_pls_golite062009 |
| protein-hormone receptor activity | 0.42902267001067 | bayes_pls_golite062009 |
| protein tyrosine kinase activity | 0.231213253402712 | bayes_pls_golite062009 |
| actin filament binding | 0.142821832073786 | bayes_pls_golite062009 |
| growth factor binding | 0.0358215683345522 | bayes_pls_golite062009 |
|
Region A: Residues: [234-317] |
1 11 21 31 41 51
| | | | | |
1 AGGPNTPPEK KDSDKLSAGA IVGIVIGCVV GLLLLLLILF CLCRKRKKEE NVPSRNVEAP 60
61 VAAATSSAAI PKETVVVVPP AKAT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [318-627] |
1 11 21 31 41 51
| | | | | |
1 GSESGAVNKD LTFFVKSFGE FDLDGLLKAS AEVLGKGTVG SSYKASFEHG LVVAVKRLRD 60
61 VVVPEKEFRE RLHVLGSMSH ANLVTLIAYY FSRDEKLLVF EYMSKGSLSA ILHGNKGNGR 120
121 TPLNWETRAG IALGAARAIS YLHSRDGTTS HGNIKSSNIL LSDSYEAKVS DYGLAPIISS 180
181 TSAPNRIDGY RAPEITDARK ISQKADVYSF GVLILELLTG KSPTHQQLNE EGVDLPRWVQ 240
241 SVTEQQTPSD VLDPELTRYQ PEGNENIIRL LKIGMSCTAQ FPDSRPSMAE VTRLIEEVSH 300
301 SSGSPNPVSD
|
| Detection Method: | |
| Confidence: | 66.522879 |
| Match: | 2qkwB |
| Description: | No description for 2qkwB was found. |
