YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CBF5_ARATH
Organism: Arabidopsis thaliana
Length: 565 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CBF5_ARATH.

Description E-value Query
Range
Subject
Range
CBF5 - Pseudouridine synthase catalytic subunit of box H/ACA small nucleolar ribonucleoprotein particles (s...
CBF5_YEAST - H/ACA ribonucleoprotein complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
487.0 [0..24] [415..3]

Back

Predicted Domain #1
Region A:
Residues: [1-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY  60
   61 TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI KRILRVEKTG HSGTLDPKVT 120
  121 GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA 180
  181 VKRQLRIRTI YESKLLEYDA DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV 240
  241 RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI 300
  301 CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV 360
  361 V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.69897
Match: 2ausC
Description: No description for 2ausC was found.

Predicted Domain #2
Region A:
Residues: [362-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRDTYPRKW GLGPRASMKK KLIADGKLDK HGKPNEKTPV EWSRNVVLPT GGDAIIAGAA  60
   61 AAPEEIKADA ENGEAGEARK RKHDDSSDSP APVTTKKSKT KEVEGEEAEE KVKSSKKKKK 120
  121 KDKEEEKEEE AGSEKKEKKK KKDKKEEVIE EVASPKSEKK KKKKSKDTEA AVDAEDESAA 180
  181 EKSEKKKKKK DKKKKNKDSE DDEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle