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View Structure Prediction Details

Protein: gi|5430760, gi|1...
Organism: Arabidopsis thaliana
Length: 116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5430760, gi|1....

Description E-value Query
Range
Subject
Range
gi|15230221, gi|... - gi|9294697|dbj|BAB03097.1| 40S ribosomal protein S17-like [Arabidopsis thaliana], gi|28416831|gb|AAO...
119.0 [0..1] [105..1]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPVIGTVVS NKMQKSVVVA VDRLFHNKIY NRYVKRTSKF MAHDDKDACN IGDRVKLDPS  60
   61 RPLSKNKHWI VAEIIKKARI YSPKAAAAAV SASASASSAS TTDSSAQSQI PPSSTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 1vs5Q
Description: No description for 1vs5Q was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 7.45319063235379 bayes_pls_golite062009
structural molecule activity 6.87843523680097 bayes_pls_golite062009
nucleic acid binding 2.61313484113692 bayes_pls_golite062009
DNA binding 1.87254683997276 bayes_pls_golite062009
binding 1.81248034004657 bayes_pls_golite062009
RNA binding 1.76502371106766 bayes_pls_golite062009
translation regulator activity 1.46320772716954 bayes_pls_golite062009
translation factor activity, nucleic acid binding 1.40718318783582 bayes_pls_golite062009
translation initiation factor activity 1.27539679024898 bayes_pls_golite062009
structure-specific DNA binding 1.11569046031534 bayes_pls_golite062009
single-stranded DNA binding 1.02592019321551 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 0.562603623565981 bayes_pls_golite062009
exoribonuclease activity 0.51569543713363 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.474251377131502 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.47336621289748 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.47336621289748 bayes_pls_golite062009
3'-5' exonuclease activity 0.32253752994732 bayes_pls_golite062009
3'-5'-exoribonuclease activity 0.22548557495593 bayes_pls_golite062009
transcription regulator activity 0.0185639841733248 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle