| Protein: | nhr-261 |
| Organism: | Caenorhabditis elegans |
| Length: | 330 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-261.
| Description | E-value | Query Range |
Subject Range |
|
|
259.0 | [0..1] | [328..201] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MDRKNGPCRI CNDPETTSSH FGAIVCTACA SFFGRTTVDK FRCIANNKCV ISCAKKITCR 60
61 SCRYDSCIRA GMNKFYTRKI K
|
| Detection Method: |  |
| Confidence: | 18.0 |
| Match: | 1lo1A |
| Description: | Steroid hormone receptor Err2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.42599378647208 | bayes_pls_golite062009 |
| protein binding | 0.576254539963841 | bayes_pls_golite062009 |
| transcription regulator activity | 0.50063581643098 | bayes_pls_golite062009 |
| DNA binding | 0.15755076348446 | bayes_pls_golite062009 |
|
Region A: Residues: [82-330] |
1 11 21 31 41 51
| | | | | |
1 APKQQVIQEV DRNETFQKSE TSSNINYAMH GFSKVLNLQN DEILQFYVKE VEKSLSQKKR 60
61 NCSKNILNAE SINDLLIISA HHTGSAMESC FQCPGINLLE KEDIQVFLRY FEFSNVWIDS 120
121 LREYSLMSHS HNKEISRTDK KVMKFINQVK STLGTALIHL KLNIYEFAAF KSFCIWNIKF 180
181 HKTSRIMRIV AQSHYMAVSF ALRMYYKNQL KLSDMEIAIR IGDITLQIAT VSTIYHDLIR 240
241 LYQDVGRSL
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.31508164334985 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 2.20996397516696 | bayes_pls_golite062009 |
| transcription regulator activity | 2.02157665604796 | bayes_pls_golite062009 |
| DNA binding | 1.47175550190876 | bayes_pls_golite062009 |
| signal transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| molecular transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| protein binding | 1.34648900580465 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29377568150934 | bayes_pls_golite062009 |
| receptor activity | 1.17902442273252 | bayes_pls_golite062009 |
| transcription activator activity | 0.96843436755116 | bayes_pls_golite062009 |
| transcription factor activity | 0.92060883178562 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.67007540744134 | bayes_pls_golite062009 |
