| Protein: | TRPA1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 275 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPA1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
229.0 | [0..10] | [273..1] |
|
Region A: Residues: [1-275] |
1 11 21 31 41 51
| | | | | |
1 MDLLKTPSST VGLSETFARL KSQGKVALIP YITAGDPDLS TTAKALKVLD SCGSDIIELG 60
61 VPYSDPLADG PAIQAAARRS LLKGTNFNSI ISMLKEVIPQ LSCPIALFTY YNPILRRGVE 120
121 NYMTVIKNAG VHGLLVPDVP LEETETLRNE ARKHQIELVL LTTPTTPKER MNAIVEASEG 180
181 FIYLVSSVGV TGTRESVNEK VQSLLQQIKE ATSKPVAVGF GISKPEHVKQ VAEWGADGVI 240
241 VGSAMVKILG ESESPEQGLK ELEFFTKSLK SALVS
|
| Detection Method: |  |
| Confidence: | 51.39794 |
| Match: | 1rd5A |
| Description: | Crystal structure of Tryptophan synthase alpha chain homolog BX1: a member of the chemical plant defense system |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| tryptophan synthase activity | 3.15663465352598 | bayes_pls_golite062009 |
| indole-3-glycerol-phosphate synthase activity | 3.12120866545322 | bayes_pls_golite062009 |
| catalytic activity | 2.81275055404078 | bayes_pls_golite062009 |
| phosphoribosylanthranilate isomerase activity | 2.655130814615 | bayes_pls_golite062009 |
| carbon-carbon lyase activity | 2.44001937916931 | bayes_pls_golite062009 |
| carboxy-lyase activity | 1.80978905789979 | bayes_pls_golite062009 |
| lyase activity | 0.9228652996943 | bayes_pls_golite062009 |
| imidazoleglycerol-phosphate synthase activity | 0.82314869965119 | bayes_pls_golite062009 |
| 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.302746738903759 | bayes_pls_golite062009 |
| isomerase activity | 0.14149405165663 | bayes_pls_golite062009 |
