YRC Public Data Repository - Protein Structure Prediction

Protein:	PP153_ARATH
Organism:	Arabidopsis thaliana
Length:	579 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP153_ARATH.

Description	E-value	Query Range	Subject Range
PP301_ARATH - Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1	469.0	[0..138]	[579..307]
gi\|87240699 - gi\|87240699\|gb\|ABD32557.1\| Tetratricopeptide-like helical [Medicago truncatula]	469.0	[0..178]	[579..237]
gi\|168023826, gi... - gi\|168023826\|ref\|XP_001764438.1\| predicted protein [Physcomitrella patens subsp. patens], gi\|1626843... gi\|54695178 - gi\|54695178\|dbj\|BAD67154.1\| PPR868-14 [Physcomitrella patens]	469.0	[0..129]	[579..385]
gi\|7363286, gi\|1... - gi\|7363286\|dbj\|BAA93030.1\| pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa Japo...	460.0	[0..177]	[579..300]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLMAIRCA RTQNIVTIGS LLQLRSSFPR LSSQFHFSGT LNSIPIKHLS TSAAANDYHQ  60
   61 NPQSGSPSQH QRPYPPQSFD SQNQTNTNQR VPQSPNQWST QHGGQIPQYG GQNPQHGGQR 120
  121 PPYGGQNPQQ GGQMSQYGGH NPQHGGHRPQ YGGQRPQY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.30103
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [159-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGPGNNYQNQ NVQQSNQSQY YTPQQQQQPQ PPRSSNQSPN QMNEVAPPPS VEEVMRLCQR  60
   61 RLYKDAIELL DKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [232-579]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMPDRECFVL LFESCANLKS LEHSKKVHDH FLQSKFRGDP KLNNMVISMF GECSSITDAK  60
   61 RVFDHMVDKD MDSWHLMMCA YSDNGMGDDA LHLFEEMTKH GLKPNEETFL TVFLACATVG 120
  121 GIEEAFLHFD SMKNEHGISP KTEHYLGVLG VLGKCGHLVE AEQYIRDLPF EPTADFWEAM 180
  181 RNYARLHGDI DLEDYMEELM VDVDPSKAVI NKIPTPPPKS FKETNMVTSK SRILEFRNLT 240
  241 FYKDEAKEMA AKKGVVYVPD TRFVLHDIDQ EAKEQALLYH SERLAIAYGI ICTPPRKTLT 300
  301 IIKNLRVCGD CHNFIKIMSK IIGRVLIVRD NKRFHHFKDG KCSCGDYW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits