Protein: | RU2B1_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 232 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RU2B1_ARATH.
Description | E-value | Query Range |
Subject Range |
|
175.0 | [0..1] | [232..1] |
Region A: Residues: [1-141] |
1 11 21 31 41 51 | | | | | | 1 MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS 60 61 EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT FVPKDKKRKQ EEKVERKRED 120 121 SQRPNTANGP SANGPSANNG V |
Detection Method: | |
Confidence: | 22.221849 |
Match: | 1oiaA |
Description: | Splicesomal U1A protein |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
6.62953239642182 | bayes_pls_golite062009 | |
mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
binding | 3.64400841800969 | bayes_pls_golite062009 |
poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
protein binding | 1.12215421354121 | bayes_pls_golite062009 |
mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
Region A: Residues: [142-232] |
1 11 21 31 41 51 | | | | | | 1 PAPSFQPSGQ ETMPPNNILF IQNLPHETTS MMLQLLFEQY PGFKEIRMID AKPGIAFVEY 60 61 EDDVQASIAM QPLQGFKITP QNPMVISFAK K |
Detection Method: | |
Confidence: | 17.221849 |
Match: | 2u1aA |
Description: | RNA BINDING DOMAIN 2 OF HUMAN U1A PROTEIN, NMR, 20 STRUCTURES |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
6.62953239642182 | bayes_pls_golite062009 | |
mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
binding | 3.64400841800969 | bayes_pls_golite062009 |
poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
protein binding | 1.12215421354121 | bayes_pls_golite062009 |
mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |