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View Structure Prediction Details

Protein: KTI12_ARATH
Organism: Arabidopsis thaliana
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KTI12_ARATH.

Description E-value Query
Range
Subject
Range
gi|23504265 - gi|23504265|emb|CAD21832.1| DRL1 protein [Arabidopsis thaliana]
223.0 [0..1] [302..1]

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Predicted Domain #1
Region A:
Residues: [1-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVVICGQP CSGKSIAAVT LAETLKESET KQSVRIIDEA SFHLDRNQNY ANMPAEKNLR  60
   61 GKLRSDVDRS VSTGEIVIVD SLNSIKGYRY ELWCIARAAG IRYCVVYCDV DEAHCRQWNK 120
  121 ERSDRGEDGY DDGIFEDLVR RFEKPERRNR WDSPLFELYP SREVIDKSSP VILEAVTYLT 180
  181 KTVDSKTQDV RILQPSIATQ AARFSEANSL YELDRATQEI INAIVEQQSL GAAISRVTLG 240
  241 NELPPIEICR PIGLPELRRL RRTFVKLMGQ SSLSGPPLPT DADSAKRRFV DYLNREFGGN 300
  301 NA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.39794
Match: 1x6vB
Description: The crystal structure of human 3'-phosphoadenosine-5'-phosphosulfate synthetase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.64537357529343 bayes_pls_golite062009
nucleic acid binding 2.51683451033161 bayes_pls_golite062009
DNA binding 2.12258000781149 bayes_pls_golite062009
transcription regulator activity 2.09345198747025 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
purine ribonucleotide binding 0.923452757551011 bayes_pls_golite062009
ribonucleotide binding 0.923391844349459 bayes_pls_golite062009
purine nucleotide binding 0.920821955769652 bayes_pls_golite062009
nucleotide binding 0.917754212279227 bayes_pls_golite062009
transcription factor activity 0.887108427603557 bayes_pls_golite062009
RNA helicase activity 0.81256037545135 bayes_pls_golite062009
RNA-dependent ATPase activity 0.74918137191219 bayes_pls_golite062009
ATP-dependent RNA helicase activity 0.69117331267457 bayes_pls_golite062009
ATP binding 0.60527666756293 bayes_pls_golite062009
adenyl ribonucleotide binding 0.573214556107072 bayes_pls_golite062009
adenyl nucleotide binding 0.554530910579109 bayes_pls_golite062009
ligase activity 0.417681194526243 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.243902356228423 bayes_pls_golite062009
protein binding 0.170837278876362 bayes_pls_golite062009
kinase activity 0.163756462988596 bayes_pls_golite062009
helicase activity 0.0775311459068899 bayes_pls_golite062009
RNA binding 0.0261282189186349 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle