YRC Public Data Repository - Protein Structure Prediction

Protein:	PNSB3_ARATH
Organism:	Arabidopsis thaliana
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNSB3_ARATH.

Description	E-value	Query Range	Subject Range
ADRX_YEAST - Adrenodoxin homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAH1 ... gi\|151942550 - gi\|151942550\|gb\|EDN60896.1\| adrenodoxin-like protein [Saccharomyces cerevisiae YJM789] YAH1 - Ferredoxin of the mitochondrial matrix required for formation of cellular iron-sulfur proteins; invo...	119.0	[0..15]	[199..2]
gi\|92889079 - gi\|92889079\|gb\|ABE89677.1\| Ferredoxin [2Fe-2S], plant [Medicago truncatula]	116.0	[0..28]	[180..11]
DMPP_ACICA - Phenol hydroxylase P5 protein OS=Acinetobacter calcoaceticus GN=mphP PE=1 SV=3 DMPP_ACICP - Phenol hydroxylase P5 protein OS=Acinetobacter calcoaceticus (strain PHEA-2) GN=mphP PE=1 SV=3	115.0	[0..77]	[202..1]
FER_MASLA - Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2 gi\|2623659 - gi\|2623659\|gb\|AAC04840.1\| ferredoxin [Fischerella sp. PCC 7605]	115.0	[0..72]	[180..2]
gi\|113611205, gi... - gi\|50937261\|ref\|XP_478158.1\| 2Fe-2S iron-sulfur cluster protein-like [Oryza sativa (japonica cultiva...	114.0	[0..35]	[188..53]
MFDX2_ARATH - Adrenodoxin-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=MFDX2 PE=2 SV=1	114.0	[0..8]	[189..10]
gi\|23345072 - gi\|23345072\|gb\|AAN17750.1\| putative electron carrier protein ferredoxin [Xenorhabdus nematophila]	113.0	[0..75]	[190..4]
gi\|77974682, gi\|... - gi\|77974682\|ref\|ZP_00830221.1\| COG0633: Ferredoxin [Yersinia frederiksenii ATCC 33641], gi\|238788182...	113.0	[0..75]	[190..4]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA  60
   61 ADEPDEPPAV DFAFVHS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLLPDGTPDV HWRRANGGQK LRDIMLDSNI ELYGPYSKPL SNCAGVGTCA TCMVEIVNGK  60
   61 ELLNPRTDIE KEKLKRKPKN WRLACQTNVG NPDSTGLVVI QQLPEWKAHE WNIPKNIPND 120
  121 DDLETST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1krhA
Description:	Benzoate dioxygenase reductase; Benzoate dioxygenase reductase, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits