YRC Public Data Repository - Protein Structure Prediction

Protein:	PNSB3_ARATH
Organism:	Arabidopsis thaliana
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNSB3_ARATH.

Description	E-value	Query Range	Subject Range
ADRX_YEAST - Adrenodoxin homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAH1 ... gi\|151942550 - gi\|151942550\|gb\|EDN60896.1\| adrenodoxin-like protein [Saccharomyces cerevisiae YJM789] YAH1 - Ferredoxin of the mitochondrial matrix required for formation of cellular iron-sulfur proteins; invo...	119.0	[0..15]	[199..2]
gi\|92889079 - gi\|92889079\|gb\|ABE89677.1\| Ferredoxin [2Fe-2S], plant [Medicago truncatula]	116.0	[0..28]	[180..11]
DMPP_ACICA - Phenol hydroxylase P5 protein OS=Acinetobacter calcoaceticus GN=mphP PE=1 SV=3 DMPP_ACICP - Phenol hydroxylase P5 protein OS=Acinetobacter calcoaceticus (strain PHEA-2) GN=mphP PE=1 SV=3	115.0	[0..77]	[202..1]
FER_MASLA - Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2 gi\|2623659 - gi\|2623659\|gb\|AAC04840.1\| ferredoxin [Fischerella sp. PCC 7605]	115.0	[0..72]	[180..2]
gi\|113611205, gi... - gi\|50937261\|ref\|XP_478158.1\| 2Fe-2S iron-sulfur cluster protein-like [Oryza sativa (japonica cultiva...	114.0	[0..35]	[188..53]
MFDX2_ARATH - Adrenodoxin-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=MFDX2 PE=2 SV=1	114.0	[0..8]	[189..10]
gi\|23345072 - gi\|23345072\|gb\|AAN17750.1\| putative electron carrier protein ferredoxin [Xenorhabdus nematophila]	113.0	[0..75]	[190..4]
gi\|77974682, gi\|... - gi\|77974682\|ref\|ZP_00830221.1\| COG0633: Ferredoxin [Yersinia frederiksenii ATCC 33641], gi\|238788182...	113.0	[0..75]	[190..4]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA  60
   61 ADEPDEPPAV DFAFVHS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.638	b.5.1	alpha-Amylase inhibitor tendamistat
View	Download	0.488	g.18.1	Complement control module/SCR domain
View	Download	0.488	g.18.1	Complement control module/SCR domain
View	Download	0.444	b.1.2	Fibronectin type III
View	Download	0.429	b.1.2	Fibronectin type III
View	Download	0.425	b.49.3	Description not found.
View	Download	0.353	d.17.5	Uracil-DNA glycosylase inhibitor protein

Predicted Domain #2

Region A:
Residues: [78-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLLPDGTPDV HWRRANGGQK LRDIMLDSNI ELYGPYSKPL SNCAGVGTCA TCMVEIVNGK  60
   61 ELLNPRTDIE KEKLKRKPKN WRLACQTNVG NPDSTGLVVI QQLPEWKAHE WNIPKNIPND 120
  121 DDLETST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1krhA
Description:	Benzoate dioxygenase reductase; Benzoate dioxygenase reductase, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits