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View Structure Prediction Details

Protein: MYB23_ARATH
Organism: Arabidopsis thaliana
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYB23_ARATH.

Description E-value Query
Range
Subject
Range
gi|41619302, gi|... - gi|6850892|emb|CAB71055.1| putative transcription factor (MYB17) [Arabidopsis thaliana], gi|41619302...
178.0 [0..1] [215..1]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMTRDGKEH EYKKGLWTVE EDKILMDYVR THGQGHWNRI AKKTGLKRCG KSCRLRWMNY  60
   61 LSPNVNRGNF TDQEEDLIIR LHKLLGNRWS LIAKRVPGRT DNQVKNYWNT HLSKKLGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1h88C
Description: c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [119-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDHSTAVKAA CGVESPPSMA LITTTSSSHQ EISGGKNSTL RFDTLVDESK LKPKSKLVHA  60
   61 TPTDVEVAAT VPNLFDTFWV LEDDFELSSL TMMDFTNGYC L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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