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View Structure Prediction Details

Protein: gi|30690520, gi|...
Organism: Arabidopsis thaliana
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30690520, gi|....

Description E-value Query
Range
Subject
Range
CCA1_ARATH - Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
725.0 [0..1] [526..83]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQALDIAIP PPRPKRKPNN PYPRKTGSGT ILMSKTGVND GKESLGSEKV SHPEMANEDR  60
   61 QQSKPEEKT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQEDNCSDCF THQYLSAASS MNKSCIETSN ASTFREFLPS REEGSQNNRV RKESNSDLNA  60
   61 KSLENGNEQG PQTYPMHIPV LVPLGSSITS SLSHPPSEPD SHPH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [174-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVAGDYQSFP NHIMSTLLQT PALYTAATFA SSFWPPDSSG GSPVPGNSPP NLAAMA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [230-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AATVAAASAW WAANGLLPLC APLSSGGFTS HPPSTFGPSC DVEYTKASTL QHGSVQSREQ  60
   61 EHSEASKARS SLDSEDVENK SKPVCHEQPS ATPESDAKGS DGAGDRKQVD RSSCGSNTPS 120
  121 SSDDVEADAS ERQEDGTNGE VKETNEDTNK PQTSESNARR SRISSNI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [397-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDPWKSVSDE GRIAFQALFS REVLPQSFTY REEHREEEQQ QQEQRYPMAL DLNFTAQLTP  60
   61 VDDQEEKRNT GFLGIGLDAS KLMSRGRTGF KPYKRCSMEA KESRILNNNP IIHVEQKDPK 120
  121 RMRLETQAST 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle