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View Structure Prediction Details

Protein: gi|30690520, gi|...
Organism: Arabidopsis thaliana
Length: 526 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30690520, gi|....

Description E-value Query
Range
Subject
Range
CCA1_ARATH - Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
725.0 [0..1] [526..83]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQALDIAIP PPRPKRKPNN PYPRKTGSGT ILMSKTGVND GKESLGSEKV SHPEMANEDR  60
   61 QQSKPEEKT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQEDNCSDCF THQYLSAASS MNKSCIETSN ASTFREFLPS REEGSQNNRV RKESNSDLNA  60
   61 KSLENGNEQG PQTYPMHIPV LVPLGSSITS SLSHPPSEPD SHPH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [174-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVAGDYQSFP NHIMSTLLQT PALYTAATFA SSFWPPDSSG GSPVPGNSPP NLAAMA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [230-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AATVAAASAW WAANGLLPLC APLSSGGFTS HPPSTFGPSC DVEYTKASTL QHGSVQSREQ  60
   61 EHSEASKARS SLDSEDVENK SKPVCHEQPS ATPESDAKGS DGAGDRKQVD RSSCGSNTPS 120
  121 SSDDVEADAS ERQEDGTNGE VKETNEDTNK PQTSESNARR SRISSNI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [397-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDPWKSVSDE GRIAFQALFS REVLPQSFTY REEHREEEQQ QQEQRYPMAL DLNFTAQLTP  60
   61 VDDQEEKRNT GFLGIGLDAS KLMSRGRTGF KPYKRCSMEA KESRILNNNP IIHVEQKDPK 120
  121 RMRLETQAST 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle