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View Structure Prediction Details

Protein: P4KG4_ARATH
Organism: Arabidopsis thaliana
Length: 566 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P4KG4_ARATH.

Description E-value Query
Range
Subject
Range
P4KG3_ARATH - Phosphatidylinositol 4-kinase gamma 3 OS=Arabidopsis thaliana GN=PI4KG3 PE=2 SV=1
503.0 [0..1] [562..1]
gi|54290883, gi|... - gi|54291083|dbj|BAD61759.1| putative ubiquitin [Oryza sativa Japonica Group], gi|54290883|dbj|BAD615...
496.0 [0..1] [561..1]
gi|92898072 - gi|92898072|gb|ABE94037.1| Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin [Medicago trun...
484.0 [0..1] [562..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAGVALSP VRSEPLIMPL VRANSCLDSY PDDTIMIYLT LPGSVIPMRV LESDSIESVK  60
   61 LRIQSYRGFV VRNQKLVFGG RELARSNSNM RDYGVSEGNI LHLVLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 2ojrA
Description: No description for 2ojrA was found.

Predicted Domain #2
Region A:
Residues: [107-423]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSDLQVLDVK TTCGKHCRFH VERGRNIGYV KKQISKKRGD FVDPDEQEIL YEGEKLEDQS  60
   61 LINDICRNDD SVLHLLVRRS AKVRVKPVEK NFELSIVAPQ AKDKKGREAK SIVPPKKLSL 120
  121 EPVVVNSKAK VPLVVKDMIQ SASDGLKSGN SPVRSSEGTG GAYFMQGPSG NKFVGVFKPI 180
  181 DEEPMAENNP QGLPLSPNGE GLKKGTKVGE GALREVAAYI LDHPKSGNKS MFGEEIGFAG 240
  241 VPPTAMIECL HPGFNHPKGI KTKIGSLQMF TENDGSCEDM GPLSFPVEEV HKISVLDIRL 300
  301 ANADRHGGNI LMTKDES

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.25
Match: 1oqyA
Description: Structure of the DNA repair protein hHR23a
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [424-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLVLVPIDH GYCLPESFED CTFEWLYWPQ ARKPYSAETQ EYIRSLDAEE DIDLLKFHGW  60
   61 KMPAETAQTL RISTMLLKKG VERGLTAFEI GTIMCRETLS KKSLVEEMVE EAQEAVLPGT 120
  121 SEAAFLEALS DVMDYHLDHS QEH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle