| Protein: | C3H12_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 384 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H12_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
255.0 | [0..1] | [384..1] |
|
|
184.0 | [0..2] | [384..1] |
|
|
157.0 | [0..10] | [384..4] |
|
|
144.0 | [0..47] | [377..70] |
|
|
139.0 | [0..47] | [360..91] |
|
|
138.0 | [0..47] | [371..91] |
|
|
137.0 | [0..47] | [373..108] |
|
|
137.0 | [0..47] | [360..99] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MSHHRRDSGG DVVHVIPTNN PPPDNWFPNL GDSAVWATED DYNRAWAMNP DNTSGDNNGP 60
61 PNKKTRGSPS SSSATTTS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.676 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.652 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.625 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.573 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.573 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.557 | d.58.17 | Metal-binding domain |
| View | Download | 0.538 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.538 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.520 | g.10.1 | Hairpin loop containing domain-like |
| View | Download | 0.420 | d.58.11 | EF-G/eEF-2 domains III and V |
|
Region A: Residues: [79-159] |
1 11 21 31 41 51
| | | | | |
1 AASNRTKAIG KMFFKTKLCC KFRAGTCPYI TNCNFAHTVE ELRRPPPNWQ EIVAAHEEER 60
61 SGGMGTPTVS VVEIPREEFQ I
|
| Detection Method: | |
| Confidence: | 11.221849 |
| Match: | 1rgoA |
| Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [160-299] |
1 11 21 31 41 51
| | | | | |
1 PSLVSSTAES GRSFKGRHCK KFYTEEGCPY GESCTFLHDE ASRNRESVAI SLGPGGYGSG 60
61 GGGGSGGGSV GGGGSSSNVV VLGGGGGSGS GSGIQILKPS NWKTRICNKW EITGYCPFGA 120
121 KCHFAHGAAE LHRFGGGLVE
|
| Detection Method: | |
| Confidence: | 3.76 |
| Match: | 1rgoA |
| Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [300-384] |
1 11 21 31 41 51
| | | | | |
1 EEGKDGVSPN PDTKQTVQNP KGLSDTTTLL SPGVPHNADA SYHTGVALQR ASSAVTQKPG 60
61 IRTHQKWKGP AKISRIYGDW IDDIE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
