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Protein Overview: C3H56_ORYSJ

General Information:
Name(s) found: C3H56_ORYSJ [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=3 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 367 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYTNAIHII PDAAGPDAWA NAAAQGGDAG IWATEDDYNS QWNADGGGGG SSRAGSEQPP  60
   61 PGKKSRGGGG GEGGGNTSKS RAIGKMFFKT KLCCKFRAGT CPYVTNCNFA HGMEELRKPP 120
  121 PNWQEIVAAH EEATEAREEH QIPIMTSSGP TAGGDAGCGG GGGGGSGRAY KGRHCKKFYT 180
  181 DEGCPYGDAC TFLHDEQSKA RESVAISLSP SVGGGGGGGS YNSAAAAAAS ASAAAGNGPM 240
  241 QKPSNWKTRI CNKWEMTGYC PFGSKCHFAH GAAELHKYGG GLVDIDSRDA AATPDSKQAV 300
  301 VSAKAPAETA AASTTVLPHA DVYHLGVQAQ RSTIAGQRSG QVQRPIQKWK GPDKISRIYG 360
  361 DWIDETE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] deduced N/A No confident structure predictions are available.
    2 View Details [88..161] PSI-BLAST 8.30103 No description for 2d9nA was found.
    3 View Details [162..209] FFAS03 2.54 No description for 2d9mA was found.
    4 View Details [210..367] PSI-BLAST 3.69897 Solution Structure of the Zinc-finger domain in KIAA1064 protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle