YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23308411, gi\|...
Organism:	Arabidopsis thaliana
Length:	463 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23308411, gi|....

Description	E-value	Query Range	Subject Range
gi\|25518568, gi\|... - gi\|9558589\|gb\|AAF88152.1\|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapi...	350.0	[0..5]	[463..41]
PUS1_ASHGO - tRNA pseudouridine synthase 1 OS=Ashbya gossypii GN=PUS1 PE=3 SV=1 PUS1_ASHGO - tRNA pseudouridine synthase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL ...	318.0	[0..12]	[434..57]
gi\|32414669, gi\|... - gi\|32414669\|ref\|XP_327814.1\| hypothetical protein [Neurospora crassa], gi\|28920438\|gb\|EAA29805.1\| hy... gi\|85091723 - gi\|85091723\|ref\|XP_959041.1\| hypothetical protein NCU07528 [Neurospora crassa OR74A]	311.0	[0..9]	[457..108]
PUS1_CANGA - tRNA pseudouridine synthase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622... PUS1_CANGA - tRNA pseudouridine synthase 1 OS=Candida glabrata GN=PUS1 PE=3 SV=1	307.0	[0..6]	[433..67]
gi\|90305863, gi\|... - gi\|90305863\|gb\|EAS35494.1\| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS], gi\|119...	307.0	[0..5]	[450..97]
PUS1_YARLI - tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PUS1 PE=3 SV=1 PUS1_YARLI - tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica GN=PUS1 PE=3 SV=1	306.0	[0..4]	[439..67]
gi\|88184224, gi\|... - gi\|88184224\|gb\|EAQ91692.1\| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51], gi\|1162...	304.0	[0..11]	[443..97]
gi\|40738761, gi\|... - gi\|67539990\|ref\|XP_663769.1\| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	303.0	[0..5]	[446..62]
gi\|115442996, gi... - gi\|115442996\|ref\|XP_001218305.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	303.0	[0..18]	[446..75]
PUS1_YEAST - tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS1 PE=1 ... gi\|151942589 - gi\|151942589\|gb\|EDN60935.1\| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] PUS1 - tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA... gi\|190407751 - gi\|190407751\|gb\|EDV11016.1\| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]	301.0	[0..5]	[459..54]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTTTDEEI DLSCDGGVTE PQKVAIIFAF CGVGYQGMQK NPGAKTIEGE LEEALFHAGA  60
   61 VPESIRGKPK LYDFARSART DKGVSAVGQV VSGRFIVDPL GFVNRLNSNL PNQIRIFGYK 120
  121 HVTPSFSSKK FCDRRRYVYL LPVFALDPIS HRDRETVMAS LGPGEEYVKC FECSERGRKI 180
  181 PPGLVGKWKG TNFGTKSLDF QSDISSNNSS ALRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	2nqpA
Description:	No description for 2nqpA was found.

Predicted Domain #2

Region A:
Residues: [215-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIKIEALSSN LAGLCSVDVE VGRIQEDSCK LNTNSSETKV KSKFCYGEKE KERFSRILSC  60
   61 YVGSYNFHNF TTRTKADDPT ANRQIISFTA NTVINLDGID FIKCEVLGKS FMLHQIRKMM 120
  121 GLAVAIMRNC ASESLIQSAF SKDVNITVPM APEVGLYLDE CFFTSYNRNF EDSHEEVS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.89
Match:	1vs3A
Description:	No description for 1vs3A was found.

Predicted Domain #3

Region A:
Residues: [393-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAYKEEAEA FKLKHIYSHI GATERKYGNM ALWLHSLNYR NYPDLNFGSC GQNTDQVLVH  60
   61 KKIDERASHS L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.775	N/A	N/A	a.60.14	Description not found.
View	Download	0.725	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.725	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.675	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.675	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.665	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.661	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.630	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.614	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.589	N/A	N/A	a.64.1	Saposin
View	Download	0.428	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.419	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.412	N/A	N/A	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.357	N/A	N/A	a.163.1	Crustacean CHH/MIH/GIH neurohormone

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits