| Protein: | PUB17_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 729 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB17_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
393.0 | [0..1] | [729..1] |
|
|
382.0 | [0..1] | [729..1] |
|
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300.0 | [0..1] | [694..1] |
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271.0 | [0..19] | [727..29] |
|
Region A: Residues: [1-226] |
1 11 21 31 41 51
| | | | | |
1 MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR 60
61 SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE STALLCLKEL YLLLYRSKIL 120
121 VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR 180
181 KARLYIDKND ESLRESFYSF LDGFENGKIP SSVDLRMFFV EKLGIR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [227-300] |
1 11 21 31 41 51
| | | | | |
1 DSKSCRSEIE FLEEQIVNHD GDLEPTGSVI NGFVAITRYC RFLLFGFEED GMEWWIENNP 60
61 KKPRKGFVAQ EIGD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.930 | N/A | N/A | a.7.16 | Description not found. |
|
Region A: Residues: [301-375] |
1 11 21 31 41 51
| | | | | |
1 TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP 60
61 NRALKNLIVQ WCTAS
|
| Detection Method: | |
| Confidence: | 10.0 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [376-729] |
1 11 21 31 41 51
| | | | | |
1 GISYESEFTD SPNESFASAL PTKAAVEANK ATVSILIKYL ADGSQAAQTV AAREIRLLAK 60
61 TGKENRAYIA EAGAIPHLCR LLTSENAIAQ ENSVTAMLNL SIYEKNKSRI MEEGDCLESI 120
121 VSVLVSGLTV EAQENAAATL FSLSAVHEYK KRIAIVDQCV EALALLLQNG TPRGKKDAVT 180
181 ALYNLSTHPD NCSRMIEGGG VSSLVGALKN EGVAEEAAGA LALLVRQSLG AEAIGKEDSA 240
241 VAGLMGMMRC GTPRGKENAV AALLELCRSG GAAVAEKVLR APAIAGLLQT LLFTGTKRAR 300
301 RKAASLARVF QRRENAAMRS GVYGFVGNTN GNRDGGFTTD VSVPISISIS VPVL
|
| Detection Method: | |
| Confidence: | 43.522879 |
| Match: | 2c1tA |
| Description: | Structure of the Kap60p:Nup2 complex |
Matching Structure (courtesy of the PDB): |
|
