YRC Public Data Repository - Protein Structure Prediction

Protein:	PUM24_ARATH
Organism:	Arabidopsis thaliana
Length:	641 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUM24_ARATH.

Description	E-value	Query Range	Subject Range
gi\|82569974, gi\|... - gi\|86129498\|ref\|NP_001034381.1\| pumilio homolog 2 [Gallus gallus], gi\|82569974\|gb\|ABB83589.1\| pumili...	390.0	[0..99]	[442..704]
gi\|109479064 - gi\|109479064\|ref\|XP_001068003.1\| PREDICTED: similar to Pumilio homolog 2 [Rattus norvegicus]	389.0	[0..99]	[441..694]
gi\|73979795 - gi\|73979795\|ref\|XP_849088.1\| PREDICTED: similar to pumilio homolog 2 isoform 1 [Canis familiaris]	388.0	[0..99]	[441..706]
gi\|114576345 - gi\|114576345\|ref\|XP_001140429.1\| PREDICTED: similar to Pum2 protein isoform 7 [Pan troglodytes]	388.0	[0..99]	[441..629]
gi\|17224452 - gi\|17224452\|gb\|AAL36981.1\|AF272350_1 translational repressor pumilio [Homo sapiens]	388.0	[0..99]	[441..519]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKGLKPQK STKRKDTDSS AKFDSLKSKK PKLVSGEQQQ HVKPKFGKPK SAGDKEQSTN  60
   61 LSKKERRVQA KELTEARKKK RKPHYNLEQE LVSLWEKMRR RNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [104-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKEDRSKLIS EAIRKMKGKV PEIAVSHVSS RVLQTCVKFC SQAEKDVLFT ELQPQFLNLA  60
   61 SNKYAVHFIQ KMLDGASKQQ LAACISSLRG HVAPLLRHVF GSLVVEHAYH LGSAAQKQEL 120
  121 LAELYSTELQ LFKGLTTSNE KTVVDIIAKL GLQKGAVNRH MTAIIQPILE KGIVDHTITH 180
  181 KLLIEYLTIA DKTSAADVLQ LLTGSLLLRM VHTRDGSRLA MLSIKHGSAK ERKKIIKAMK 240
  241 EHVKKMAFDQ FGSMVLACIF SIVDDTKLVT KIIVRELEAT LKDLVMDKNG RRPLLQLLHP 300
  301 NSSRYLSHDD LAALDLSVPS LCSMDKSETS SKTKDTDGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.522879
Match:	1ib2A
Description:	Pumilio 1
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [443-641]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIGEETKDEQ EDTVAEHSDH EENVTAMGGK KDPLVRRQEL LVNSGLAERL IDVCVENAEE  60
   61 FLQSKFGNEV MYEVAIGGSD GILCPSLSEK LCELYEAISS VAAEPKPQES EKDSEHILEN 120
  121 FHSSRTIRRL VLNRPGFASI LFKKALSGKC RSWAQGHCSK ILSAFVETED VQVREMAKTE 180
  181 LQVLVNEGTL KISATKKPE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1ib2A
Description:	Pumilio 1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits