YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DAPB3_ARATH
Organism: Arabidopsis thaliana
Length: 298 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPB3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536648 - gi|21536648|gb|AAM60980.1| dihydrodipicolinate reductase-like protein [Arabidopsis thaliana]
263.0 [0..1] [298..1]

Back

Predicted Domain #1
Region A:
Residues: [1-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVNCHFFQ LSRHLKPSRP SFSCSASQPS QNNIKVIING AAKEIGRAAV VAVTKARGME  60
   61 LAGAVDNHFV GEDIGLLCDM EEPLEIPVVS DLTMVLGSIS QGKEVGVVID FTDPSTVYEN 120
  121 VKQATAFGMK SVVYVPRIKP ETVSALSALC DKATMGCLVA PTLSIGSILL QQAVIMASFH 180
  181 YNNVELVESR PNAADLPSPE AIQIANNISN LGQIYNREDS STDVQARGQV IGEDGVRVHS 240
  241 MVLPGLPSST QVYFSSPGDV YTVKHDIIDV RSLMPGLLLA IRKVVRLKNL VYGLEKFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.522879
Match: 1c3vA
Description: DIHYDRODIPICOLINATE REDUCTASE FROM MYCOBACTERIUM TUBERCULOSIS COMPLEXED WITH NADPH AND PDC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aspartate-semialdehyde dehydrogenase activity 2.99580112154281 bayes_pls_golite062009
catalytic activity 2.91887313269429 bayes_pls_golite062009
oxidoreductase activity 2.86254373278283 bayes_pls_golite062009
dihydrodipicolinate reductase activity 2.74085594134831 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.19591951564949 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 1.07932840802619 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 0.23458869447046 bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity 0.22364954992375 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.22262673350502 bayes_pls_golite062009
glyceraldehyde-3-phosphate dehydrogenase activity 0.0876163188309598 bayes_pls_golite062009
saccharopine dehydrogenase activity 0.0126684068691896 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle