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View Structure Prediction Details

Protein: C3H54_ARATH
Organism: Arabidopsis thaliana
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H54_ARATH.

Description E-value Query
Range		 Subject
Range
gi|38260624 - gi|38260624|gb|AAR15441.1| Cu2+ plastocyanin-like [Arabidopsis arenosa]
 253.0 [0..1] [245..1]
gi|34013873 - gi|34013873|gb|AAQ56099.1| zing finger transcription factor PEI1 [Arabidopsis lyrata subsp. lyrata]
 248.0 [0..1] [245..1]
gi|38260609 - gi|38260609|gb|AAR15427.1| Zn-finger transcription factor [Sisymbrium irio]
 241.0 [0..1] [245..1]
gi|38196013 - gi|38196013|gb|AAR13693.1| zinc finger transcription factor [Brassica oleracea]
 238.0 [0..1] [245..1]
gi|38260642 - gi|38260642|gb|AAR15458.1| Zn-finger transcription factor [Capsella rubella]
 227.0 [0..1] [245..1]
gi|38260661 - gi|38260661|gb|AAR15476.1| Zn-finger transcription factor [Olimarabidopsis pumila]
 225.0 [0..1] [245..1]
gi|34013885 - gb|AAQ56110.1| zing finger transcription factor PEI1 [Boechera drummondii]
gi|34013885 - gi|34013885|gb|AAQ56110.1| zing finger transcription factor PEI1 [Boechera drummondii]
 222.0 [0..1] [245..1]
C3H30_ARATH - Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2
 147.0 [0..31] [232..240]

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Predicted Domain #1
Region A:
Residues: [1-132] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSASPMAF YDIGEQQYST FGYILSKPGN AGAYEIDPSI PNIDDAIYGS DEFRMYAYKI  60
   61 KRCPRTRSHD WTECPYAHRG EKATRRDPRR YTYCAVACPA FRNGACHRGD SCEFAHGVFE 120
  121 YWLHPARYRT RA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.63
Match: 2cqeA
Description: Solution Structure of the Zinc-finger domain in KIAA1064 protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [133-155] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNAGNLCQRK VCFFAHAPEQ LRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 2d9nA
Description: No description for 2d9nA was found.

Predicted Domain #3
Region A:
Residues: [156-245] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEGKHRCRYA YRPVRARGGG NGDGVTMRMD DEGYDTSRSP VRSGKDDLDS NEEKVLLKCW  60
   61 SRMSIVDDHY EPSDLDLDLS HFDWISELVD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle