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Protein Overview: C3H30_ARATH

General Information:
Name(s) found: C3H30_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 716 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription [TAS]
    Molecular Function: nucleic acid binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCGSDRLNQ IVSSRSSLPI SFEEDNNLVT NTDMNHLTVE TEDTFASLLE LAANNDVEGV  60
   61 RLSIERDPSC VDEAGLWYGR QKGSKAMVND YRTPLMVAAT YGSIDVIKLI VSLTDADVNR 120
  121 ACGNDQTTAL HCAASGGAVN AIQVVKLLLA AGADLNLLDA EGQRAGDVIV VPPKLEGVKL 180
  181 MLQELLSADG SSTAERNLRV VTNVPNRSSS PCHSPTGENG GSGSGSPLGS PFKLKSTEFK 240
  241 KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300
  301 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE 360
  361 ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS PLSPSAAGNG MSHSNMAWPQ 420
  421 PNVPALHLPG SNLQSSRLRS SLNARDIPTD EFNMLADYEQ QQLLNEYSNA LSRSGRMKSM 480
  481 PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS 540
  541 SPKSVDHSLF SGGGRMSPRN VVEPISPMSA RVSMLAQCVK QQQQQQQQQQ QQHQFRSLSS 600
  601 RELRTNSSPI VGSPVNNNTW SSKWGSSNGQ PDWGMSSEAL GKLRSSSSFD GDEPDVSWVQ 660
  661 SLVKETPAEA KEKAATSSSG EHVMKQPNPV EPVMDHAGLE AWIEQMQLDQ LVAQQN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..378] PSI-BLAST 70.69897 Ankyrin-R
    2 View Details [379..445] deduced N/A No confident structure predictions are available.
    3 View Details [446..716] MSA 6.178997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle