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View Structure Prediction Details

Protein: SCL3_ARATH
Organism: Arabidopsis thaliana
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCL3_ARATH.

Description E-value Query
Range
Subject
Range
gi|125574562, gi... - gi|37533564|ref|NP_921084.1| putative SCARECROW gene regulator-like [Oryza sativa (japonica cultivar...
420.0 [0..23] [478..127]
SCR_ARATH - Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1
413.0 [0..6] [481..241]
gi|115184057 - gi|115184057|gb|ABI84225.1| dwarf plant9 [Zea mays]
412.0 [0..22] [479..204]
gi|112012486 - gi|112012486|gb|ABH85406.1| SCARECROW [Pinus sylvestris]
407.0 [0..23] [481..445]
gi|56605384, gi|... - gi|56605384|emb|CAI30893.1| SCARECROW [Cucumis sativus], gi|56605382|emb|CAI30892.1| SCARECROW [Cucu...
405.0 [0..3] [480..421]
GAI1_VITVI - DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
397.0 [0..4] [481..166]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT  60
   61 CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE ALANRILKSW PGLYKALNAT 120
  121 QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [162-284]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKMVHVIDLD ASEPAQWLAL LQAFNSRPEG PPHLRITGVH HQKEVLEQMA HRLIEEAEKL  60
   61 DIPFQFNPVV SRLDCLNVEQ LRVKTGEALA VSSVLQLHTF LASDDDLMRK NCALRFQNNP 120
  121 SGV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.964 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.964 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.926 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.926 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.895 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.884 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.879 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.879 N/A N/A c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain
View Download 0.852 N/A N/A c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.818 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain

Predicted Domain #3
Region A:
Residues: [285-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLQRVLMMSH GSAAEAREND MSNNNGYSPS GDSASSLPLP SSGRTDSFLN AIWGLSPKVM  60
   61 VVTEQDSDHN GSTLMERLLE SLYTYAALFD CLETKVPRTS QDRIKVEKML FGEEIKNIIS 120
  121 CEGFERRERH EKLEKWSQRI DLAGFGNVPL SYYAMLQARR LLQGCGFDGY RIKEESGCAV 180
  181 ICWQDRPLYS VSAWRCRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle