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View Structure Prediction Details

Protein: RP5L1_ARATH
Organism: Arabidopsis thaliana
Length: 210 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RP5L1_ARATH.

Description E-value Query
Range
Subject
Range
rpb-5 - RNA polymerase status:Confirmed UniProt:Q9N5K2 protein_id:AAF39906.1
303.0 [0..1] [210..1]

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Predicted Domain #1
Region A:
Residues: [1-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS  60
   61 ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH RGIVVVPMAI TAPARMAVSE 120
  121 LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA 180
  181 RYYGLKRGQV VKIRRSDATS LDYYTYRFAV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.522879
Match: 1dzfA
Description: Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle