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Protein Overview: rpb-5

General Information:
Name(s) found: rpb-5 / CE23831 [WormBase]
Description(s) found:
Found 23 descriptions.
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  • WBGene00019246 locus:rpb-5 DNA-directed RNA polymerases I, II, and III subunit RPABC1 status:Confirmed UniProt:Q9N5K2 protein_id:CCD72467.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 211 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    transcription [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    DNA-directed RNA polymerase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDELETYR LWRIRKTVLQ MVHDRGYLVA QDELDQPLET FKVQYGDRPS EKKPARSDLT  60
   61 ILVAHNDDPA DQMFVFFPED AKIGIKTIKA ICQQMQEQNI SRAIIVVQTG MTPSAKQSIG 120
  121 DMAPKYMLEH FLEAELMVNI TEHELVPEHV VMTAEEKAEL LARYKLKDSQ LPRIQQCDPV 180
  181 ARYFGLRRGQ VVKIIRPSET AGRYITYRLV V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..211] PSI-BLAST 74.0 Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle