YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RP5L1_ARATH

General Information:
Name(s) found: RP5L1_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • DNA-directed RNA polymerase subunit 5-like protein 1 OS=Arabidopsis thaliana GN=NRPB5L1 PE=3 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 210 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: transcription [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS  60
   61 ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH RGIVVVPMAI TAPARMAVSE 120
  121 LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA 180
  181 RYYGLKRGQV VKIRRSDATS LDYYTYRFAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 77.522879 Eukaryotic RPB5 N-terminal domain; Eukaryotic RPB5 C-terminal domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle