| Protein: | CCA1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 608 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
451.0 | [0..83] | [608..1] |
|
|
382.0 | [0..1] | [608..1] |
|
|
381.0 | [0..1] | [608..1] |
|
|
353.0 | [0..132] | [608..225] |
|
|
315.0 | [0..20] | [452..134] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ 60
61 IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP NNPYPRKTGS GTILMSKTGV 120
121 NDGK
|
| Detection Method: |  |
| Confidence: | 12.69897 |
| Match: | 2v1dB |
| Description: | No description for 2v1dB was found. |
|
Region A: Residues: [125-205] |
1 11 21 31 41 51
| | | | | |
1 ESLGSEKVSH PEMANEDRQQ SKPEEKTLQE DNCSDCFTHQ YLSAASSMNK SCIETSNAST 60
61 FREFLPSREE GSQNNRVRKE S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.557 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.557 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.380 | a.14.1 | Thermostable subdomain from chicken villin headpiece |
| View | Download | 0.334 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.334 | a.112.1 | Description not found. |
| View | Download | 0.329 | a.69.4 | Description not found. |
| View | Download | 0.276 | d.298.1 | Description not found. |
|
Region A: Residues: [206-375] |
1 11 21 31 41 51
| | | | | |
1 NSDLNAKSLE NGNEQGPQTY PMHIPVLVPL GSSITSSLSH PPSEPDSHPH TVAGDYQSFP 60
61 NHIMSTLLQT PALYTAATFA SSFWPPDSSG GSPVPGNSPP NLAAMAAATV AAASAWWAAN 120
121 GLLPLCAPLS SGGFTSHPPS TFGPSCDVEY TKASTLQHGS VQSREQEHSE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [376-477] |
1 11 21 31 41 51
| | | | | |
1 ASKARSSLDS EDVENKSKPV CHEQPSATPE SDAKGSDGAG DRKQVDRSSC GSNTPSSSDD 60
61 VEADASERQE DGTNGEVKET NEDTNKPQTS ESNARRSRIS SN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.388 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.354 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.322 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.322 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.322 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.322 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.281 | N/A | N/A | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.204 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.203 | N/A | N/A | a.39.1 | EF-hand |
|
Region A: Residues: [478-608] |
1 11 21 31 41 51
| | | | | |
1 ITDPWKSVSD EGRIAFQALF SREVLPQSFT YREEHREEEQ QQQEQRYPMA LDLNFTAQLT 60
61 PVDDQEEKRN TGFLGIGLDA SKLMSRGRTG FKPYKRCSME AKESRILNNN PIIHVEQKDP 120
121 KRMRLETQAS T
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
