YRC Public Data Repository - Protein Structure Prediction

Protein:	CDC21_ARATH
Organism:	Arabidopsis thaliana
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC21_ARATH.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	497.0	[0..2]	[454..1189]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	484.0	[0..2]	[455..1145]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	472.0	[0..2]	[454..627]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	468.0	[0..2]	[445..1049]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	466.0	[0..2]	[454..1012]
gi\|49124494, gi\|... - gi\|67902962\|ref\|XP_681737.1\| hypothetical protein AN8468.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	456.0	[0..1]	[456..766]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK  60
   61 DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS LHQQPKSVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [120-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRRYIPQTSE RTLDAPDIVD DFYLNLLDWG SANVLAIALD HTVYLWDAST GSTSELVTID  60
   61 EEKGPVTSIN WAPDGRHVAV GLNNSEVQLW DSASNRQLRT LKGGHQSRVG SLAWNNHILT 120
  121 TGGMDGLIIN NDVRIRSPIV ETYRGHTQEV CGLKWSGSGQ QLASGGNDNV VHIWDRSVAS 180
  181 SNSTTQWLHR LEEHTSAVKA LAWCPFQANL LATGGGGGDR TIKFWNTHTG ACLNSVDTGS 240
  241 QVCSLLWSKN ERELLSSHGF TQNQLTLWKY PSMVKMAELT GHTSRVLYMA QSPDGCTVAS 300
  301 AAGDETLRFW NVFGVPETAK KAAPKAVSEP FSHVNRIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits