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View Structure Prediction Details

Protein: SCP39_ARATH
Organism: Arabidopsis thaliana
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCP39_ARATH.

Description E-value Query
Range
Subject
Range
SCP37_ARATH - Serine carboxypeptidase-like 37 OS=Arabidopsis thaliana GN=SCPL37 PE=2 SV=2
463.0 [0..1] [500..1]

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Predicted Domain #1
Region A:
Residues: [1-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELQDWSVT TCLLLLLFQA SQIHCTSQTH VLNRLLYRSK RGFGSSVDTN HLNAIRHLSV  60
   61 SSPQNTSGVN QQEQKERDLI ENLPGQPSVS FRQYGGYVTV NESAGRSLYY YFVEATKTKK 120
  121 SLPLVLWLNG GPGCSSLYGA FQELGPFRIY GDGKTLYTNP YSWNNVANIL FLESPVGTGF 180
  181 SYTNTESDLE NPGDMKAAAD KYIFLVKWLE RFPEYKGREF YIAGESYAGH YVPQLAQTIL 240
  241 VHNKNQNFIN LRGILIGNPT LNDIVETTGS FDYLVSHALL SQDSLLSYKE NCATDTPKME 300
  301 VDCIALSMKI DDDIKKMNLY NILTPTCINA TLTPLTNQSK ECTTVLQYEP CGMQYIAAYL 360
  361 NREDVQRSMH VTKLPHTWML CNEATGFNWN QTDYSASMLP ILKELMKHDQ LRVWVYTGDT 420
  421 DTVIPLTVTM HALKMMNLTA VTDWLPWFSE GQVGGFTEEY KGNFRYATVI GAGHEVPLYK 480
  481 PKAALTLFKH FIRNSPLPLT P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 99.0
Match: 1ivyA
Description: Human 'protective protein', HPP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 4.09944423676394 bayes_pls_golite062009
peptidase activity 2.49064988313037 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.10044305272656 bayes_pls_golite062009
catalytic activity 1.39629727416851 bayes_pls_golite062009
palmitoyl-(protein) hydrolase activity 1.3250951453762 bayes_pls_golite062009
binding 0.780364496307855 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.541803897301601 bayes_pls_golite062009
endopeptidase activity 0.43631945855397 bayes_pls_golite062009
palmitoyl-CoA hydrolase activity 0.1174692258176 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle