YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3738333, gi\|1...
Organism:	Arabidopsis thaliana
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3738333, gi|1....

Description	E-value	Query Range	Subject Range
gi\|85702892, gi\|... - gi\|85702892\|ref\|ZP_01033996.1\| translation initiation factor [Roseovarius sp. 217], gi\|85671820\|gb\|E...	259.0	[0..35]	[253..2]
gi\|25028065, gi\|... - gi\|25028065\|ref\|NP_738119.1\| translation initiation factor IF-3 [Corynebacterium efficiens YS-314], ...	256.0	[0..39]	[256..2]
gi\|56381095, gi\|... - gi\|56421253\|ref\|YP_148571.1\| translation initiation factor IF-3 [Geobacillus kaustophilus HTA426], g...	253.0	[0..60]	[255..38]
gi\|71369942, gi\|... - gi\|71369942\|ref\|ZP_00660335.1\| Initiation factor 3 [Nocardioides sp. JS614], gi\|71154334\|gb\|EAO04868...	251.0	[0..40]	[297..100]
gi\|83846241, gi\|... - gi\|83943233\|ref\|ZP_00955693.1\| translation initiation factor [Sulfitobacter sp. EE-36], gi\|83846241\|... gi\|83954368, gi\|... - gi\|83954368\|ref\|ZP_00963088.1\| translation initiation factor [Sulfitobacter sp. NAS-14.1], gi\|838414...	248.0	[0..60]	[254..5]
gi\|67986973, gi\|... - gi\|69286435\|ref\|ZP_00617483.1\| Initiation factor 3 [Kineococcus radiotolerans SRS30216], gi\|67986973...	248.0	[0..46]	[306..28]
gi\|148655186, gi... - gi\|148655186\|ref\|YP_001275391.1\| translation initiation factor IF-3 [Roseiflexus sp. RS-1], gi\|14856...	246.0	[0..61]	[298..4]
gi\|113938217, gi... - gi\|159901151\|ref\|YP_001547398.1\| translation initiation factor IF-3 [Herpetosiphon aurantiacus ATCC ...	244.0	[0..79]	[293..7]
IF3_STRAW - Translation initiation factor IF-3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM ... IF3_STRAW - Translation initiation factor IF-3 OS=Streptomyces avermitilis GN=infC PE=3 SV=1	243.0	[0..81]	[290..5]
gi\|18377498, gi\|... - gi\|18417644\|ref\|NP_567851.1\| translation initiation factor 3 (IF-3) family protein [Arabidopsis thal...	243.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGITSSTVG FNAVFTGITK TVSSHSLFSV DSKLCSLRLS KTELSFTNLT PSPRRAFAVT  60
   61 CRFGGGGGGY RFSGDNRRGR PKEAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.649	b.3.2	Carboxypeptidase D, a regulatory domain
View	Download	0.649	b.3.2	Carboxypeptidase D, a regulatory domain
View	Download	0.633	b.1.3	PKD domain
View	Download	0.633	b.1.3	PKD domain
View	Download	0.569	d.93.1	SH2 domain
View	Download	0.569	d.93.1	SH2 domain
View	Download	0.549	d.82.4	Description not found.
View	Download	0.532	d.93.1	SH2 domain
View	Download	0.475	d.19.1	MHC antigen-recognition domain
View	Download	0.469	d.93.1	SH2 domain

Predicted Domain #2

Region A:
Residues: [86-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDEALDISSI RSATVRLIDG QQNMLGLVSK DEAVRMADDA ELDLVILSPD ADPPVVKMMD  60
   61 YSKYRYEQQK RKKDQQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.045757
Match:	1tifA
Description:	TRANSLATION INITIATION FACTOR 3 N-TERMINAL DOMAIN
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [163-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTTRMDLKEL KMGYNIDQHD YSVRLRAAQK FLQDGDKVKV IVSMKGRENE FRNIAIELLR  60
   61 RFQTEIGELA TEESKNFRDR NMFIILVPNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1tigA
Description:	TRANSLATION INITIATION FACTOR 3 C-TERMINAL DOMAIN
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [253-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMIRKPQEPP TRKKKKTAEN EASASAAEIT AEPEPEPEPE PEPEPEPEPE PEPEPLQIDS  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.58
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits