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Protein Overview: gi|18377498, gi|...

General Information:
Name(s) found: gi|18417644 [NCBI NR]
gi|18377498 [NCBI NR]
gi|14596121 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|18417644|ref|NP_567851.1| translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18377498|gb|AAL66915.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14596121|gb|AAK68788.1| putative protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 281 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    cell wall [IDA]
    Biological Process: translational initiation [IEA][ISS]
    Molecular Function: translation initiation factor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGITSTVGF NAILAGATKT VSHPVKSKLF GLRLCVPEFS IVSLSPYHHR RCPAITCRYG  60
   61 GGGGGGSRFP GDRRGRQKES EDDDSLDISA IRSATVRLID DQQNMIGLVS KEEAVRRAED 120
  121 AELDLVILSP DADPPVVRMM DYSKYRYEQQ KRKKEQQKKT TRMDLKELKM GYNIDQHDYS 180
  181 VRMRAARKFL QDGDKVKVIV NMKGRENEFR NIAIELLRRF QTEIGELGTE ESKNFRDRNL 240
  241 FIVLVPNKEV IRKVQEPPPK KKKKPADDKV SAANITATQD I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] deduced N/A No confident structure predictions are available.
    2 View Details [82..158] PSI-BLAST 26.0 TRANSLATION INITIATION FACTOR 3 N-TERMINAL DOMAIN
    3 View Details [159..281] PSI-BLAST 30.69897 TRANSLATION INITIATION FACTOR 3 C-TERMINAL DOMAIN

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • translation initiation factor activity
    		•  5.47485713101079 bayes_pls_golite062009
  • translation regulator activity
    		•  1.62528736558737 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.60662288414996 bayes_pls_golite062009
  • binding
    		•  1.47561914415547 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.12320467511263 bayes_pls_golite062009
    3
    Term Confidence Notes
  • translation initiation factor activity
    		•  8.09269133854598 bayes_pls_golite062009
  • translation regulator activity
    		•  4.19718241948497 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  4.18160226822061 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.21583663075334 bayes_pls_golite062009
  • binding
    		•  2.86350131209009 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle