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View Structure Prediction Details

Protein: RGLG1_ARATH
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGLG1_ARATH.

Description E-value Query
Range
Subject
Range
gi|30697566 - gi|30697566|ref|NP_849857.1| copine-related [Arabidopsis thaliana]
429.0 [0..65] [489..21]
gi|46390797, gi|... - gi|51964680|ref|XP_507124.1| PREDICTED P0680F05.38 gene product [Oryza sativa (japonica cultivar-gro...
405.0 [0..93] [489..10]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGNSKEES SSPSSSSWAS HQSYPQYGPD SYNYPPPPTY APAPSPAPAP APVPAPSPAS  60
   61 SYGPQYSQEG YASQPNNPPP PTYAPAPSPA SSYGHQYSQE GYASAASQPN YPPPPSQSQV 120
  121 ADRKKFDRRY SKISDNYSSL LQVSEALGRA GLESSNLIVG IDFTKSNEWT GAKSFNRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLHHLSNTPN PYEQAITIIG RTLAAFDEDN LIPCYGFGDA STHDQDVFSF YPEGRFCNGF  60
   61 EEVLARYREI VPQLKLAGPT SFAPIIEMAM TVVEQSSGQY HVLVIIADGQ VTRSVDTEHG 120
  121 RLSPQEQKTV DAIVKASTLP LSIVLVGVGD G

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 91.337242
Match: PF07002.7
Description: No description for PF07002.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [330-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWDMMQEFDD NIPARAFDNF QFVNFTEIMS KNKDQSRKET EFALSALMEI PPQYKATIEL  60
   61 NLLGVRNGNI PQRIPLPPPV QSGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [414-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFSSSRIPNF EPSVPPYPFE SKQMSSADDI QLCPICLSNP KNMAFGCGHQ TCCECGPDLK  60
   61 VCPICRAPIQ TRIKLY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.04
Match: 2ea5A
Description: No description for 2ea5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle