YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7488090, gi|1...
Organism: Arabidopsis thaliana
Length: 203 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7488090, gi|1....

Description E-value Query
Range
Subject
Range
gi|42568255, gi|... - gi|8843884|dbj|BAA97410.1| disease resistance protein-like [Arabidopsis thaliana], gi|42570590|ref|N...
275.0 [0..1] [203..7]

Back

Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFFSPTQVF LNYRGEQLRR SFVSHLIDAF ERNEINFFVD KYEQRGKDLK NLFLRIQESK  60
   61 IALAIFSTRY TESSWCMDEL VKIKKLADKR KLHVIPIFYK VKVEDVRKQT GEFGDNFWTL 120
  121 AKVSSGDQIK K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.39794
Match: 1fyvA
Description: Toll-like receptor 1, TLR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.261666574457319 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [132-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKEALECIPN KMGLSLGDKS DEADFIKEVV KAVQCVVATI GLEEEENHFG KKKRKDCKCE  60
   61 LPDLKKSRTK KL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.611 N/A N/A a.40.1 Calponin-homology domain, CH-domain
View Download 0.558 N/A N/A a.40.1 Calponin-homology domain, CH-domain
View Download 0.544 N/A N/A a.40.1 Calponin-homology domain, CH-domain
View Download 0.484 N/A N/A a.133.1 Phospholipase A2, PLA2
View Download 0.481 N/A N/A a.40.1 Calponin-homology domain, CH-domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle