| Protein: | gi|15222423, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 1028 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15222423, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
617.0 | [0..1] | [1027..1] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MADSLRTSFS ERDVEQAITS LKKGSYLLKY GRRGKPKFCP FQLTSDESAL VWYSGKEEKQ 60
61 IKLSQVLRIV PGQRTPTFKR YPRPEKEYQS FSLICPDRSL DLICKDKDEA EVWVVGLKSL 120
121 ITRVKVSKWK TTIKPE
|
| Detection Method: |  |
| Confidence: | 17.522879 |
| Match: | 1maiA |
| Description: | STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM PHOSPHOLIPASE C DELTA IN COMPLEX WITH INOSITOL TRISPHOSPHATE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.29080729281876 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.48216092627697 | bayes_pls_golite062009 |
| actin binding | 2.31347896928633 | bayes_pls_golite062009 |
| protein binding | 2.12168271674167 | bayes_pls_golite062009 |
| actin filament binding | 0.636262824984581 | bayes_pls_golite062009 |
| transcription regulator activity | 0.324566338715835 | bayes_pls_golite062009 |
| DNA binding | 0.136435190086451 | bayes_pls_golite062009 |
| nucleic acid binding | 0.118897432176337 | bayes_pls_golite062009 |
|
Region A: Residues: [137-198] |
1 11 21 31 41 51
| | | | | |
1 ITSAECPTPH ARRVSPFVTI LDQVIQPSNE TSTQTRLGKV FSDIVAITAP PSNNNQTEAS 60
61 GN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.677 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.624 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.599 | a.2.3 | Chaperone J-domain |
| View | Download | 0.558 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.549 | a.29.2 | Bromodomain |
|
Region A: Residues: [199-558] |
1 11 21 31 41 51
| | | | | |
1 LFCPFSPTPA NVENSNLRFS TNDPFRLSLS SAVSTSSHGS YHEDFDALGD VFVWGESISD 60
61 GVLSGTGNSL NSTTEDALLP KALESTIVLD AQNIACGKCH AVLVTKQGEI FSWGEGKGGK 120
121 LGHGLETDAQ KPKFISSVRG LGFKSLACGD FHTCAITQSG DLYSWGDGTH NVDLLGHGNE 180
181 SSCWIPKRVT GDLQGLYVSD VACGPWHTAV VASSGQLFTF GDGTFGALGH GDRRSTSVPR 240
241 EVESLIGLIV TKVACGVWHT AAVVEVTNEA SEAEVDSSRG QVFTWGDGEK GQLGHGDNDT 300
301 KLLPECVISL TNENICQVAC GHSLTVSRTS RGHVYTMGST AYGQLGNPTA KGNFPERVEG 360
361
|
| Detection Method: | |
| Confidence: | 85.0 |
| Match: | 1a12A |
| Description: | Regulator of chromosome condensation RCC1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| Ran guanyl-nucleotide exchange factor activity | 1.99390987036621 | bayes_pls_golite062009 |
| binding | 1.94765972306941 | bayes_pls_golite062009 |
| GTPase regulator activity | 0.902045197448864 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.881338215451345 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 0.732530371959803 | bayes_pls_golite062009 |
| small GTPase regulator activity | 0.676767309840836 | bayes_pls_golite062009 |
| Ras guanyl-nucleotide exchange factor activity | 0.623383363250545 | bayes_pls_golite062009 |
| protein binding | 0.568399753749593 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.510366022767141 | bayes_pls_golite062009 |
| chromatin binding | 0.22692195000219 | bayes_pls_golite062009 |
|
Region A: Residues: [559-1028] |
1 11 21 31 41 51
| | | | | |
1 DIVEASVEEI ACGSYHVAVL TSKSEIYTWG KGLNGQLGHG NVENKREPAV VGFLREKQVK 60
61 AITCGSNFTA VICVHKWVPG SEHSLCAGCR NPFNFRRKRH NCYNCGLVFC KVCSSRKSLR 120
121 AALAPDMNKP YRVCYGCFTK LKKSRESSPS TPTSRTRKLL NMRKSTDVSE RDSLTQKFLS 180
181 VNARLSSADS SLHYSERRHH RRDLKPEVNN SNVFPSMNGS LQPVGSPFSK GSTALPKIPK 240
241 NMMVKIPGSG MSSRTTSPVS VKSTSPRRSY EVAAAESKQL KDSFNQDMAG LKEQVEQLAS 300
301 KAHQLEEELE KTKRQLKVVT AMAADEAEEN RSAKEVIRSL TTQLKEMAEK QSQKDSISTN 360
361 SKHTDKEKSE TVTQTSNQTH IRSMVSQDSQ NENNLTSKSF ANGHRKQNDK PEKVVQDEPG 420
421 VYLTLLSLPG GGTELKRVRF SRKQFTEEQA EKWWGENGAK VCERHNILVS
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
