YRC Public Data Repository - Protein Structure Prediction

Protein:	DNJA6_ARATH
Organism:	Arabidopsis thaliana
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNJA6_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21536561 - gi\|21536561\|gb\|AAM60893.1\| putative DnaJ protein [Arabidopsis thaliana]	435.0	[0..1]	[442..1]
gi\|57900655, gi\|... - gi\|57900656\|gb\|AAW57781.1\| putative DnaJ protein [Oryza sativa (japonica cultivar-group)], gi\|579006...	372.0	[0..1]	[440..1]
gi\|16326131 - gi\|16326131\|dbj\|BAB70509.1\| DNAJ homologue [Oryza sativa]	370.0	[0..1]	[429..1]
DNAJ_HALOH - Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV...	364.0	[0..81]	[441..1]
gi\|55736204, gi\|... - gb\|AAV61736.1\| heat shock protein, chaperonin [Streptococcus thermophilus CNRZ1066], gb\|AAV59846.1\|... DNAJ_STRT1 - Chaperone protein DnaJ OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dnaJ PE=3 SV=1 DNAJ_STRT2 - Chaperone protein DnaJ OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=dnaJ PE=3 ...	352.0	[0..82]	[442..1]
DNAJ_STAEQ - Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1	352.0	[0..82]	[441..1]
gi\|7441913, gi\|3... - pir\|\|H69038 heat shock protein dnaJ - Methanobacterium thermoautotrophicum (strain Delta H), gi\|312... DNAJ_METTH - Chaperone protein DnaJ OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM...	351.0	[0..82]	[441..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIIQLGSTC VAQWSIRPQF AVRAYYPSRI ESTRHQNSSS QVNCLGASKS SMFSHGSLPF  60
   61 LSMTGMSRNM HPPRRGSRFT V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RADADYYSVL GVSKNATKAE IKSAYRKLAR NYHPDVNKDP GAEEKFKEIS NAYEVLSDDE  60
   61 KKSLYDRYGE AGLKGAAGFG NGDFSNPFDL FDSLFEGFGG G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1bq0A
Description:	J-DOMAIN (RESIDUES 1-77) OF THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 1-104) OF THE MOLECULAR CHAPERONE DNAJ, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [183-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGSRSRAV DGQDEYYTLI LNFKEAVFGM EKEIEISRLE SCGTCEGSGA KPGTKPTKCT  60
   61 TCGGQGQVVS AARTPLGVFQ QVMTCSSCNG TGEISTPCGT CSGDGRVRKT KRISLKVPAG 120
  121 VDSGSRLRVR GEGNAGKRGG SPGDLFVVIE VIPDPILKRD DTNILYTCKI SYIDAILGTT 180
  181 LKVPTVDGTV DLKVPAGTQP STTLVMAKKG VPVLNKSNMR GDQLVRVQVE IPKRLSKEEK 240
  241 KLIEELADMS KNKTANSTSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	1nltA
Description:	The crystal structure of Hsp40 Ydj1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits