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View Structure Prediction Details

Protein: gi|7446455, gi|7...
Organism: Arabidopsis thaliana
Length: 649 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7446455, gi|7....

Description E-value Query
Range
Subject
Range
gi|125557122 - gi|125557122|gb|EAZ02658.1| hypothetical protein OsI_24769 [Oryza sativa Indica Group]
gi|34395075, gi|... - gi|50933973|ref|XP_476514.1| putative receptor kinase Lecrk [Oryza sativa (japonica cultivar-group)]...
464.0 [0..1] [649..5]

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Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSKVSILLF SLASLLLFRS TTGIEFIYNS NFTTTNTLLL GNATVKSPPS ILTLTNQTTF  60
   61 SIGRGLYPSR INASSSSASP LPFATSFIFS MAPFKHLSPG HGFAFVFLPF SETSAASSSQ 120
  121 HLGLFNFTNN GDPNSRIFAV EFDVFANQEF NDINDNHVGV DVNSLTSVAS ETAGFYGGRD 180
  181 GQRFTELKLN SGENYQAWIE FNGSAINVTM ARASSRKPIR PLISIPLNLT GVLLDDMFVG 240
  241 FTAST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 1fatA
Description: Phytohemagglutinin-L, PHA-L, also arcelin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.40096962515027 bayes_pls_golite062009
protein binding 1.80794638640093 bayes_pls_golite062009
protein kinase activity 1.4419983524192 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.24960126056886 bayes_pls_golite062009
signal transducer activity 1.24423621131253 bayes_pls_golite062009
molecular transducer activity 1.24423621131253 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.22297882223243 bayes_pls_golite062009
kinase activity 1.20198110006055 bayes_pls_golite062009
transferase activity 0.634621009477606 bayes_pls_golite062009
receptor activity 0.376562682962271 bayes_pls_golite062009
transcription regulator activity 0.372701974560119 bayes_pls_golite062009
nucleic acid binding 0.339759264844777 bayes_pls_golite062009
transmembrane receptor activity 0.213382263378401 bayes_pls_golite062009
DNA binding 0.157628282318248 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [246-649]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQLVQSHRIL SWSFSNSNFS IGDSVLKSKG FIAGVSSGVV LQRLEGDVED WETEYWPHRV  60
   61 QYKDVLEATK GFSDENMIGY GGNSKVYRGV LEGKEVAVKR IMMSPRESVG ATSEFLAEVS 120
  121 SLGRLRHKNI VGLKGWSKKG GESLILIYEY MENGSVDKRI FDCNEMLNWE ERMRVIRDLA 180
  181 SGMLYLHEGW ETKVLHRDIK SSNVLLDKDM NARVGDFGLA KLQNTSKEMV STTHVVGTAG 240
  241 YMAPELVKTG RASAQTDVYS FGVFVLEVVC GRRPIEEGRE GIVEWIWGLM EKDKVVDGLD 300
  301 ERIKANGVFV VEEVEMALRI GLLCVHPDPR VRPKMRQVVQ ILEQGRLVED GGEREISLLE 360
  361 RVKSSYLLET GEGSRQQHPT FQDVWNSSSY SNSFQTYDSI LHGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.69897
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle