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View Structure Prediction Details

Protein: gi|12323398, gi|...
Organism: Arabidopsis thaliana
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12323398, gi|....

Description E-value Query
Range
Subject
Range
gi|25315958, gi|... - pir||F96804 hypothetical protein T5M16.11 [imported] - Arabidopsis thaliana, gi|15223976|ref|NP_1778...
318.0 [0..1] [381..1]

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Predicted Domain #1
Region A:
Residues: [1-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNHLQDPLT TYPKPGLTKE EQEIDEKMVS LQAESIVNAV AFPMVLKAAL ELGVIDTIAA  60
   61 ASNGTWLSPS EIAVSLPNKP TNPEAPVLLD RMLRLLVSHS ILKCCMVESR ENGQTGKIER 120
  121 VYAAEPICKY FLKDSDGSGS LSSLLLLLHS QVILKTWTNL KDVILEGKDA FSSAHDMRLF 180
  181 EYISSDDQFS KLFHRAMSES STMVMKKVLE EYRGFEDVNT LVDVGGGIGT ILGLITSKYP 240
  241 HIKGVNFDLA QVLTQAPFYP GVKHVSGDMF IEVPKGDAIF MKWILHDWGD EDCIKILKNC 300
  301 WKSLPEKGKV IIVEMITPME PKPNDFSCNT VLGMDLLMLT QCSGGKERSL SQFENLAFAS 360
  361 GFLLCEIICL SYSYSVIEFH K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.30103
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009
transcription regulator activity 0.4843036104266 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle