| Protein: | UBP1B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 419 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP1B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
279.0 | [0..4] | [417..56] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN 60
61 IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD RRSAGLAILS LNGRHLFGQP 120
121 IKVNW
|
| Detection Method: |  |
| Confidence: | 40.522879 |
| Match: | 1l3kA |
| Description: | Nuclear ribonucleoprotein A1 (RNP A1, UP1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [126-223] |
1 11 21 31 41 51
| | | | | |
1 AYASGQREDT SSHFNIFVGD LSPEVTDAML FTCFSVYPTC SDARVMWDQK TGRSRGFGFV 60
61 SFRNQQDAQT AIDEITGKWL GSRQIRCNWA TKGATSGE
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 2dgoA |
| Description: | No description for 2dgoA was found. |
|
Region A: Residues: [224-419] |
1 11 21 31 41 51
| | | | | |
1 DKQSSDSKSV VELTSGVSED GKDTTNGEAP ENNAQYTTVY VGNLAPEVSQ VDLHRHFHSL 60
61 GAGVIEEVRV QRDKGFGFVR YSTHVEAALA IQMGNTHSYL SGRQMKCSWG SKPTPAGTAS 120
121 NPLPPPAPAP IPGFSASDLL AYERQLAMSK MAGMNPMMHH PQGQHAFKQA AMGATGSNQA 180
181 IYDGGYQNAQ QLMYYQ
|
| Detection Method: | |
| Confidence: | 4.01 |
| Match: | 1u6fA |
| Description: | NMR solution structure of TcUBP1, a single RBD-unit from Trypanosoma cruzi |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.74219150342477 | bayes_pls_golite062009 |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| mRNA binding | 3.63162433534903 | bayes_pls_golite062009 |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| 2.01377515075173 | bayes_pls_golite062009 | |
| DNA binding | 1.99030664201171 | bayes_pls_golite062009 |
| transcription factor activity | 1.09958329302628 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.08300488237934 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.642030653276422 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.462558743683805 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
