YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25518568, gi\|...
Organism:	Arabidopsis thaliana
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25518568, gi|....

Description	E-value	Query Range	Subject Range
PUS1_CANGA - tRNA pseudouridine synthase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622... PUS1_CANGA - tRNA pseudouridine synthase 1 OS=Candida glabrata GN=PUS1 PE=3 SV=1	333.0	[0..2]	[546..31]
gi\|115442996, gi... - gi\|115442996\|ref\|XP_001218305.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	331.0	[0..1]	[545..23]
gi\|40738761, gi\|... - gi\|67539990\|ref\|XP_663769.1\| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	330.0	[0..1]	[545..23]
PUS1_YEAST - tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS1 PE=1 ... gi\|151942589 - gi\|151942589\|gb\|EDN60935.1\| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] PUS1 - tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA... gi\|190407751 - gi\|190407751\|gb\|EDV11016.1\| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]	325.0	[0..37]	[547..54]
PUS1_ASHGO - tRNA pseudouridine synthase 1 OS=Ashbya gossypii GN=PUS1 PE=3 SV=1 PUS1_ASHGO - tRNA pseudouridine synthase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL ...	323.0	[0..12]	[542..24]
gi\|169783932 - gi\|169783932\|ref\|XP_001826428.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775172 - gi\|83775172\|dbj\|BAE65295.1\| unnamed protein product [Aspergillus oryzae]	321.0	[0..1]	[544..23]
gi\|90305863, gi\|... - gi\|90305863\|gb\|EAS35494.1\| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS], gi\|119...	320.0	[0..1]	[526..61]
gi\|88184224, gi\|... - gi\|88184224\|gb\|EAQ91692.1\| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51], gi\|1162...	313.0	[0..6]	[524..62]
gi\|71000998, gi\|... - gi\|71000998\|ref\|XP_755180.1\| tRNA pseudouridine synthase [Aspergillus fumigatus Af293], gi\|66852818\|... gi\|159129271 - gi\|159129271\|gb\|EDP54385.1\| tRNA pseudouridine synthase, putative [Aspergillus fumigatus A1163]	313.0	[0..1]	[545..23]
PUS1_YARLI - tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PUS1 PE=3 SV=1 PUS1_YARLI - tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica GN=PUS1 PE=3 SV=1	310.0	[0..10]	[533..35]

Back

Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQEPDIEK LPRDDVPDRE PDHKKLKIST TGQETDSSAV TTGGSNVAER RAPKYRRRKV  60
   61 AIVFAFCGVG YQGMQKNPGA KTIEGELEEA LFHAGAVPDA DRNKPRNYEW ARSARTDKGV 120
  121 SAVGQVVSGR FYVDPPGFVE RLNSKLPDQI RVFGYKRVAP SF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.45
Match:	2nqpA
Description:	No description for 2nqpA was found.

Predicted Domain #2

Region A:
Residues: [163-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKKFCDRRR YVYLIPVFAL DPCVHGEAEM VRTDLGYEYV KCVECSEKGY KIPLGVMGKD  60
   61 TDCCDTKSLE IQSDISSSTC DAIGADVKCE TLSSSVPSAE NNLNSEVLDG ADVSALSSKA 120
  121 EGMEESNTLA KVEMNNGEGE DMTKSESKFC YGEKEKERFN RILSYYVGSH NFHNFTTRTK 180
  181 AADPAANRYI LSFNANTVIN LDGKDFVKCE VVGQSFMLHQ IRKMIGLAVA IMRNYAPESL 240
  241 IEASFKKDVR INVPMAPEVG LYLDECFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.045757
Match:	2nqpA
Description:	No description for 2nqpA was found.

Predicted Domain #3

Region A:
Residues: [431-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSYNKRFKGS HEEVSMEEYK EVAEEFKWKY VYSHIGSAEE KDGAVAIWLH SLNQRNYPDL  60
   61 RSNEYQPDEV IVYKKIGEAS EENIHEGNAE LFVVDKVNDE TSEGTTMEER TTLEEKATG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.636	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.636	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.628	a.4.1	Homeodomain-like
View	Download	0.586	a.4.1	Homeodomain-like
View	Download	0.566	a.4.1	Homeodomain-like
View	Download	0.560	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.560	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.432	a.24.17	Group V grass pollen allergen
View	Download	0.353	a.7.6	Ribosomal protein S20

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits