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View Structure Prediction Details

Protein: gi|189339286, gi...
Organism: Arabidopsis thaliana
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189339286, gi....

Description E-value Query
Range
Subject
Range
gi|118344558, gi... - gi|55771082|dbj|BAD69801.1| cathepsin D1 [Takifugu rubripes], gi|118344558|ref|NP_001072052.1| cathe...
298.0 [0..15] [448..3]

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Predicted Domain #1
Region A:
Residues: [1-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLIFFLCS FLSLFLLPPS NIAAVSNHNK YLKLPLLRKS PFPSPTQALA LDTRRLHFLS  60
   61 LRRKPIPFVK SPVVSGAASG SGQYFVDLRI GQPPQSLLLI ADTGSDLVWV KCSACRNCSH 120
  121 HSPATVFFPR HSSTFSPAHC YDPVCRLVPK PDRAPICNHT RIHSTCHYEY GYADGSLTSG 180
  181 LFARETTSLK TSSGKEARLK SVAFGCGFRI SGQSVSGTSF NGANGVMGLG RGPISFASQL 240
  241 GRRFGNKFSY CLMDYTLSPP PTSYLIIGNG GDGISKLFFT PLLTNPLSPT FYYVKLKSVF 300
  301 VNGAKLRIDP SIWEIDDSGN GGTVVDSGTT LAFLAEPAYR SVIAAVRRRV KLPIADALTP 360
  361 GFDLCVNVSG VTKPEKILPR LKFEFSGGAV FVPPPRNYFI ETEEQIQCLA IQSVDPKVGF 420
  421 SVIGNLMQQG FLFEFDRDRS RLGFSRRGCA LP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.30103
Match: 2psgA
Description: REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.01508543827677 bayes_pls_golite062009
hydrolase activity 0.77554493777157 bayes_pls_golite062009
peptidase activity 0.68518523369811 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.43925265235199 bayes_pls_golite062009
endopeptidase activity 0.43264884039584 bayes_pls_golite062009
aspartic-type endopeptidase activity 0.30585066730542 bayes_pls_golite062009
aspartic-type peptidase activity 0.30585066730542 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle