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View Structure Prediction Details

Protein: FQRL2_ARATH
Organism: Arabidopsis thaliana
Length: 273 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FQRL2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593010 - gi|21593010|gb|AAM64959.1| minor allergen [Arabidopsis thaliana]
240.0 [0..1] [273..1]

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Predicted Domain #1
Region A:
Residues: [1-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGGGCVPS KKKKPATTGD GPGIDDDNDA TNAPIQIDDD QTTIDGDRTT ATNTGGTTTP  60
   61 AITTTAAKIS SPLKIFVVFY SMYGHVESLA KRMKKGVDSV EGVEATLYRV PETLSQEVVE 120
  121 QMKAPVKDLE IPEITAAELT AADGFLFGFP TRYGCMAAQM KAFFDSTGSL WKEQSLAGKP 180
  181 AGFFVSTGTQ GGGQETTAWT AITQLVHHGM LFVPIGYTFG AGMFKMDSIR GGSPYGAGVF 240
  241 AGDGSREATE TELALAEHQG NYMAAIVKRL AQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.221849
Match: 2a5lA
Description: The crystal structure of the Trp repressor binding protein WrbA from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 2.32880196921974 bayes_pls_golite062009
binding 1.54529414520518 bayes_pls_golite062009
oxidoreductase activity 1.2698167260481 bayes_pls_golite062009
catalytic activity 0.275631658558537 bayes_pls_golite062009
protein binding 0.191220795572558 bayes_pls_golite062009
transcription factor binding 0.0852528568191628 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle