YRC Public Data Repository - Protein Structure Prediction

Protein:	C3H15_ARATH
Organism:	Arabidopsis thaliana
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H15_ARATH.

Description	E-value	Query Range	Subject Range
gi\|145326690, gi... - gi\|91806051\|gb\|ABE65754.1\| zinc finger family protein [Arabidopsis thaliana], gi\|145326690\|ref\|NP_00...	223.0	[0..1]	[308..1]
gi\|68351612 - gi\|68351612\|gb\|EAN32373.1\| hypothetical protein TP02_0087 [Theileria parva] gi\|71030028 - gi\|71030028\|ref\|XP_764656.1\| hypothetical protein [Theileria parva strain Muguga]	133.0	[0..26]	[304..395]
gi\|84995796 - gi\|84995796\|ref\|XP_952620.1\| Zinc finger-like regulatory protein [Theileria annulata strain Ankara] gi\|65302781 - gi\|65302781\|emb\|CAI74888.1\| Zinc finger-like regulatory protein, putative [Theileria annulata]	129.0	[0..26]	[304..393]
gi\|218197316 - gi\|218197316\|gb\|EEC79743.1\| hypothetical protein OsI_21099 [Oryza sativa Indica Group] C3H39_ORYSJ - Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa subsp. japonica GN=Os05g0576300 PE=2 S...	129.0	[0..37]	[286..96]
gi\|31563370, gi\|... - gi\|31563370\|ref\|NP_852149.1\| zinc finger, CCCH-type with G patch domain isoform b [Homo sapiens], gi...	120.0	[0..35]	[258..4]
TISD_MOUSE - Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2 PE=1 SV=2	119.0	[0..106]	[291..32]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKIAPFSY SGSSAGNSSS GGVVSSSLYS DQLYKSTRNI MQQRQDMVNR EALCYTRLHE  60
   61 ASLEAEALRL ENTELRSMNL RLKNELNSLI RSSIQNRFDH RSPLRMLSNL SIGGNDADEV 120
  121 ENQNRTVNRD DVNDKSPTSV MENEDL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.42
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [147-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRSSLPKSIS VRSNGYSKAS QGGGGAAAQS GKPRGTVTKP GTCGQVSTTQ KVYVRGGGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [206-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEDQEEEIEV EVYNQGMTKT ELCNKWQETG TCPYGDHCQF AHGIKELRPV IRHPRYKTEV  60
   61 CRMVLAGDNC PYGHRCHFRH SLSEQEKLVA AGFKPKSSLK LIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1rgoA
Description:	Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits