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View Structure Prediction Details

Protein: gi|15240117, gi|...
Organism: Arabidopsis thaliana
Length: 689 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240117, gi|....

Description E-value Query
Range
Subject
Range
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1
309.0 [0..2] [689..144]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKYNIKPKQ INKNKEMGMM RSSRTMGLGH CMVYVVVLSA IAATVTSYPY SSPYSSPQTP  60
   61 HYNSPSHEHK SPKYAPHPKP YVYISPPPPS YYSPSPKVNY KSPPPPNVYN SPPPPYYSPS 120
  121 PKVDYKSPPP PYVYSSPPPP Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [142-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSPSPKVDYK SPPPPYVYSS PPPPYYSPSP KVEYKSPPPP YVYNSPPPPY YSPSPKIEYK  60
   61 SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYNSPPPPY YSPSPKVDYK SPPPPYVYSS 120
  121 PPPPYFSPSP KVEYKSPPPP YVYNSPPPPY YSPSPKVEYK SPPPPYVYSS PPPPYYSPSP 180
  181 KVYYKSPPPP YVYSSPPPPY 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [342-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSPSPKVDYK SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYSSPPPQY YSPSPKVAYK  60
   61 SPPPPYVYSS PPPPYYSPSP KVAYKSPPPP YVYSSPPPPY YSPSPKVDYK S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [453-689]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPYVYSSP PPPYYSPSPK VEYKSPPPPY VYSSPPPPYY SPSPKVEYKS PPPPYVYSSP  60
   61 PPPYHSPSPK VNYKSPPPPY VYSSHPPPYY SPSPKVNYKS PPPPYVYSSP PPPYYSPSPK 120
  121 VNYKSPPPPY VYSSPPPPYY SPSPMVDYKS TPPPYVYSFP PLPYYSPSPK VDYKSPPLPY 180
  181 VYSSPPPLYY SPSPKVHYKS PPPPYVYNSP PPPYYSPSPK VTYKSPPPPY VYKAPYY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle