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View Structure Prediction Details

Protein: gi|15240117, gi|...
Organism: Arabidopsis thaliana
Length: 689 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240117, gi|....

Description E-value Query
Range
Subject
Range
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1
309.0 [0..2] [689..144]

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Predicted Domain #1
Region A:
Residues: [1-141]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKYNIKPKQ INKNKEMGMM RSSRTMGLGH CMVYVVVLSA IAATVTSYPY SSPYSSPQTP  60
   61 HYNSPSHEHK SPKYAPHPKP YVYISPPPPS YYSPSPKVNY KSPPPPNVYN SPPPPYYSPS 120
  121 PKVDYKSPPP PYVYSSPPPP Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [142-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSPSPKVDYK SPPPPYVYSS PPPPYYSPSP KVEYKSPPPP YVYNSPPPPY YSPSPKIEYK  60
   61 SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYNSPPPPY YSPSPKVDYK SPPPPYVYSS 120
  121 PPPPYFSPSP KVEYKSPPPP YVYNSPPPPY YSPSPKVEYK SPPPPYVYSS PPPPYYSPSP 180
  181 KVYYKSPPPP YVYSSPPPPY 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [342-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSPSPKVDYK SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP YVYSSPPPQY YSPSPKVAYK  60
   61 SPPPPYVYSS PPPPYYSPSP KVAYKSPPPP YVYSSPPPPY YSPSPKVDYK S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [453-689]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPYVYSSP PPPYYSPSPK VEYKSPPPPY VYSSPPPPYY SPSPKVEYKS PPPPYVYSSP  60
   61 PPPYHSPSPK VNYKSPPPPY VYSSHPPPYY SPSPKVNYKS PPPPYVYSSP PPPYYSPSPK 120
  121 VNYKSPPPPY VYSSPPPPYY SPSPMVDYKS TPPPYVYSFP PLPYYSPSPK VDYKSPPLPY 180
  181 VYSSPPPLYY SPSPKVHYKS PPPPYVYNSP PPPYYSPSPK VTYKSPPPPY VYKAPYY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle