YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PPD_ARATH
Organism: Arabidopsis thaliana
Length: 262 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPD_ARATH.

Description E-value Query
Range
Subject
Range
gi|214034777, gi... - gi|254479271|ref|ZP_05092613.1| hydrolase, alpha/beta fold family, putative [Carboxydibrachium pacif...
gi|20515541, gi|... - gi|20807053|ref|NP_622224.1| alpha/beta superfamily hydrolase/acyltransferase [Thermoanaerobacter te...
gi|20807053 - gi|20807053|ref|NP_622224.1| predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamil...
167.0 [0..1] [259..11]

Back

Predicted Domain #1
Region A:
Residues: [1-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGEGGAEPV IHFVFVHGAS HGAWCWYKLT TLLDAAGFKS TSVDLTGAGI SLIDSNIVFD  60
   61 SDQYNRPLFS LLSDLPPHHK VILVGHSIGG GSVTEALCKF TDKISMAIYL AASMVQPGSI 120
  121 PSPHLSNIHV GEEDIWEYTY GEGTDKPPTG VLMKPEFIRH YYYSQSPLED VTLSSKLLRP 180
  181 APMRAFQDLD KLPPNPEAEK VPRVYIKTAK DNLFDSVRQD LLVENWPPSQ LYVLEDSDHS 240
  241 AFFSVPTTLF AYLLRAVSFL QR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.09691
Match: 1y7hA
Description: Structural and biochemical studies identify tobacco SABP2 as a methylsalicylate esterase and further implicate it in plant innate immunity, Northeast Structural Genomics Target AR2241
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.76673721118052 bayes_pls_golite062009
carboxylesterase activity 0.73967567655491 bayes_pls_golite062009
lipase activity 0.51002916472898 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.0940814269146387 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle