YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7021724, gi\|1...
Organism:	Arabidopsis thaliana
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7021724, gi|1....

Description	E-value	Query Range	Subject Range
SDE5_ARATH - Putative nuclear RNA export factor SDE5 OS=Arabidopsis thaliana GN=SDE5 PE=2 SV=1	462.0	[0..1]	[468..1]
gi\|87162886 - gi\|87162886\|gb\|ABD28681.1\| UBA-like; HSC20, C-terminal oligomerisation [Medicago truncatula]	345.0	[0..12]	[467..12]
gi\|49388233, gi\|... - gi\|50911074\|ref\|XP_466970.1\| PRLI-interacting factor N-like [Oryza sativa (japonica cultivar-group)]...	326.0	[0..5]	[457..6]
gi\|134091609, gi... - gi\|50255287\|gb\|EAL18022.1\| hypothetical protein CNBK0430 [Cryptococcus neoformans var. neoformans B-...	292.0	[0..17]	[455..438]
gi\|83767238 - gi\|83767238\|dbj\|BAE57377.1\| unnamed protein product [Aspergillus oryzae] gi\|169769819 - gi\|169769819\|ref\|XP_001819379.1\| hypothetical protein [Aspergillus oryzae RIB40]	276.0	[0..5]	[452..121]
gi\|57229979, gi\|... - gi\|58260976\|ref\|XP_567898.1\| hypothetical protein CNK03050 [Cryptococcus neoformans var. neoformans ...	271.0	[0..17]	[422..438]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ  60
   61 CDQVEMKTAT SKPTQVYVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.822	a.77.1	DEATH domain

Predicted Domain #2

Region A:
Residues: [80-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEVPRQEDSK AKVWRPKRNS ISNGTVSSVI GKEYARTRPI SNAPKEATKP LKINSRDIPE  60
   61 TEIWSEEMRK SNEGKISRAP TDVEEFIVKM LGEGFQASQE VIHQVLGVCG YDVKKSTEKL 120
  121 LDFSDTKKYA DVGISNEVVS FYYDFQFGSQ EGRNAKNGLE KEVLEALFSG AERYVDKPKV 180
  181 TRHFGERRPG VAGRPVFKPL EDPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QERVVAVKQS SNTSKEDDDE NEFKAHRKAV REHLNQMKEY YGAAAEAFSK GETERAHRLV  60
   61 EKGHFFGQKA READDKSVAK MIDVN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.958607
Match:	PF08590.1
Description:	No description for PF08590.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [369-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEDDSTYEED EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR  60
   61 KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	2d9iA
Description:	No description for 2d9iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits