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Protein Overview: SDE5_ARATH

General Information:
Name(s) found: SDE5_ARATH [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Putative nuclear RNA export factor SDE5 OS=Arabidopsis thaliana GN=SDE5 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 490 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: production of ta-siRNAs involved in RNA interference [TAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ  60
   61 CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI SNGTVSSVIG KEYARTRPIS 120
  121 NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV 180
  181 IHQVLGVCGY DVKKSTEKLL DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ 240
  241 SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP 300
  301 LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER 360
  361 AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED EVVTVNMNEH EAKEALRLLK 420
  421 RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI 480
  481 DPKKLSFAKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..293] deduced N/A No confident structure predictions are available.
    2 View Details [294..490] PSI-BLAST 26.39794 No description for 2vkcA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle