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View Structure Prediction Details

Protein: 1A19_ARATH
Organism: Arabidopsis thaliana
Length: 470 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 1A19_ARATH.

Description E-value Query
Range
Subject
Range
gi|7576444 - gi|7576444|dbj|BAA94600.1| 1-aminocyclopropane-1-carboxylate synthase [Populus euramericana]
gi|7576444 - dbj|BAA94600.1| 1-aminocyclopropane-1-carboxylate synthase [Populus euramericana]
405.0 [0..2] [469..6]

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Predicted Domain #1
Region A:
Residues: [1-470]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLSRKVTS NAHGQDSSYF LGWEEYEKNP YDEIKNPNGI IQMGLAENQL CFDLIETWLA  60
   61 KNPDAAGLKK DGQSIFKELA LFQDYHGLPE FKKALAEFME EIRGNRVTFD PSKIVLAAGS 120
  121 TSANETLMFC LAEPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIHCSSSNG FQITESALQQ 180
  181 AYQQAQKLDL KVKGVLVTNP SNPLGTMLTR RELNLLVDFI TSKNIHLISD EIYSGTVFGF 240
  241 EQFVSVMDVL KDKNLENSEV SKRVHIVYSL SKDLGLPGFR VGAIYSNDEM VVSAATKMSS 300
  301 FGLVSSQTQY LLSALLSDKK FTSTYLDENQ KRLKIRQKKL VSGLEAAGIT CLKSNAGLFC 360
  361 WVDMRHLLDT NTFEAELELW KKIVYDVKLN ISPGSSCHCT EPGWFRVCFA NMSEDTLDLA 420
  421 MKRLKEYVES TDSRRVISKS SHDRIKSLRK RTVSNWVFRV SWTDRVPDER 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 110.0
Match: 1ynuA
Description: Crystal structure of apple ACC synthase in complex with L-vinylglycine
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-aspartate:2-oxoglutarate aminotransferase activity 4.43277563699654 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
transferase activity 0.737426388870721 bayes_pls_golite062009
4-aminobutyrate transaminase activity 0.487922584683825 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 0.390162083170876 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 0.390162083170876 bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 0.212259855101758 bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds 0.130931097173495 bayes_pls_golite062009
cystathionine beta-lyase activity 0.0833010353195099 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle