| Protein: | MYB5_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 249 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYB5_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
201.0 | [0..13] | [240..2] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MMSCGGKKPV SKKTTPCCTK MGMKRGPWTV EEDEILVSFI KKEGEGRWRS LPKRAGLLRC 60
61 GKSCRLRWMN YLRPSVKRGG ITSDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120
121 THLRKKLLRQ
|
| Detection Method: |  |
| Confidence: | 36.39794 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.334577365229545 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0696342306231097 | bayes_pls_golite062009 |
|
Region A: Residues: [131-249] |
1 11 21 31 41 51
| | | | | |
1 GIDPQTHKPL DANNIHKPEE EVSGGQKYPL EPISSSHTDD TTVNGGDGDS KNSINVFGGE 60
61 HGYEDFGFCY DDKFSSFLNS LINDVGDPFG NIIPISQPLQ MDDCKDGIVG ASSSSLGHD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.430 | a.118.18 | Cysteine rich protein B (HcpB) |
| View | Download | 0.362 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.296 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.271 | a.1.1 | Globin-like |
| View | Download | 0.269 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
